Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1
_202017-05-22] 10,764 sequences; 18,099,857 total letters
Query= NC_030394.2
Length=126965
Score E
Sequences producing significant alignments: (Bits) Value
seq7460 132 4e-26
seq8122 111 1e-19
>seq7460
Length=1425
Score = 132 bits (146), Expect = 4e-26
Identities = 414/640 (65%), Gaps = 12/640 (2%)
Strand=Plus/Minus
Query 29595 TGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTT 29654
|||| ||| | || |||| ||||| | ||||| | | ||||| | | || || |
Sbjct 1330 TGTTGATCTTGAGCTTGGGGAAGGGGCGCGGCTCGCGGTTAAGCTGTTCCTTGAGGGGCT 1271
Query 29655 CCACGTGGTCAAGGTAGACGTGAGCA-TCTCCCAGGGTGTGGACAAACTCTCCCGGTTCT 29713
| ||||||| ||| | ||| ||| || || | | ||||| ||||| ||||| |
Sbjct 1270 CGACGTGGTTTTTGTAAATGTG-GCAGTCGCCGATGACGTGGATGAACTC-CCCGGCGCG 1213
Query 29714 -AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 29772
|| |||||| | || | || | |||||| || | ||| ||| ||||| |||||
Sbjct 1212 CAGGCCGGTGCACTTTGCGAGCAGATGCGTGAGAAGCGCGTACGAGGCAATGTTGAAGGG 1153
Query 29773 CACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCT 29832
||| || || || ||||| || |||| |||||| | |||||||||||||| || | |
Sbjct 1152 CACGCCCAGGCCGATGTCGCCCGACCGCTGGTACATTTGGCACGAGAGCTCGCCCTTGGA 1093
Query 29833 CACGTAAAACTG---ACACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTT 29889
|||||||||||| ||||| ||||| || || ||||||||||| || |
Sbjct 1092 CACGTAAAACTGCGCGAACATG---TGGCAGGGCGGCAGGGCCATGAGGTGGAACGCCGC 1036
Query 29890 GGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCAC 29949
||||||||||| | | ||| ||||| | ||| ||||| | ||||| || |||
Sbjct 1035 CGGGTTCCAGGCCGAGAGGATCATGCGGCGGTCCGTCGGGTTCGTTTTGATGGTGTGCAC 976
Query 29950 GGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTGNNNNNNNNNNNNNNNNNN 30008
| | || ||||| || || ||| || | ||| ||
Sbjct 975 -AAGCTGCGCGAGCTGGTCTACGCCCTGGCCGGCGTACTCGTCGTGCATGGTCTTGTACT 917
Query 30009 NNNNNNCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGT 30068
| || || | ||||||||| ||||| || || || || || ||||| || | |
Sbjct 916 CGGCGCCAAAGTGGCGCCACTGGAAGCCGTAAACGGGGCCGAGATCGCCCTCCTCGCGAT 857
Query 30069 GCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCC 30128
| || ||| ||||||| | | | | ||| |||||| ||||||| || | |
Sbjct 856 CCGTGAGGCCGATCTTGTCAAGGTACGCGCGGGACCCGTTGCCGTCCCAAATGTGAATGT 797
Query 30129 CCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCA 30188
|||| || ||| |||| | | ||| || || |||||| ||||| |||||
Sbjct 796 CCTTTTCCTGCAGCGACTTGGCGCTGGTGTCGCCCGAGATGAACCAGAGCAGTTCCTCGG 737
Query 30189 CGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30228
||||| | ||||||||| | ||||||||| || || ||
Sbjct 736 CGACGCCGCGCCAAAAGACGCGCTTGGTCGTCAGCAGCGG 697
>seq8122
Length=2121
Score = 111 bits (122), Expect = 1e-19
Identities = 159/224 (71%), Gaps = 0/224 (0%)
Strand=Plus/Minus
Query 49871 TCTCGAGCACGAGCTGGGCTATCCTGTCGCCCCTCTCGACCCGAAAGGCATCACACCCAA 49930
|||||||||||||||| || ||||||||||| || ||| | ||| || ||
Sbjct 1756 TCTCGAGCACGAGCTGCGCGATCCTGTCGCCGACCTTGACGTCGAGGGCCTCGTCGCCGT 1697
Query 49931 AGTTAAACAGTATGACGCCGAGGTTGCCCCTGTAGTCGGGGTCCACCACCCCGGCACCGA 49990
||| || || | |||||||| ||| || | ||||||| |||| | || || || ||||
Sbjct 1696 GGTTGAAGAGCACGACGCCGACGTTTCCGCGGTAGTCGCGGTCGATGACGCCCGCGCCGA 1637
Query 49991 CGTCTATAAACTTTTTCAGGGCCAGGCCGGACCTGGGAGCCACCCTGCCGTAGAGGCCCG 50050
|||| || ||| ||| || || || |||| || ||||| | ||||||| |||||
Sbjct 1636 CGTCGATGTGCTTCTTCCACGCGAGCCCCGACCGCGGCGCCACGCGGCCGTAGGTGCCCG 1577
Query 50051 GGGGCATCTTCACGGCAAGGTCCGTCTTTACCAGGGCCCTGCCG 50094
||| | || ||||| | ||| ||||| || || || |||||
Sbjct 1576 CGGGGACCTGGACGGCCACGTCGGTCTTGACGAGCCCCTTGCCG 1533
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406109916972904
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |