Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1 _202017-05-22] 10,764 sequences; 18,099,857 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq7460 132 4e-26 seq8122 111 1e-19 >seq7460 Length=1425 Score = 132 bits (146), Expect = 4e-26 Identities = 414/640 (65%), Gaps = 12/640 (2%) Strand=Plus/Minus Query 29595 TGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTT 29654 |||| ||| | || |||| ||||| | ||||| | | ||||| | | || || | Sbjct 1330 TGTTGATCTTGAGCTTGGGGAAGGGGCGCGGCTCGCGGTTAAGCTGTTCCTTGAGGGGCT 1271 Query 29655 CCACGTGGTCAAGGTAGACGTGAGCA-TCTCCCAGGGTGTGGACAAACTCTCCCGGTTCT 29713 | ||||||| ||| | ||| ||| || || | | ||||| ||||| ||||| | Sbjct 1270 CGACGTGGTTTTTGTAAATGTG-GCAGTCGCCGATGACGTGGATGAACTC-CCCGGCGCG 1213 Query 29714 -AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 29772 || |||||| | || | || | |||||| || | ||| ||| ||||| ||||| Sbjct 1212 CAGGCCGGTGCACTTTGCGAGCAGATGCGTGAGAAGCGCGTACGAGGCAATGTTGAAGGG 1153 Query 29773 CACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCT 29832 ||| || || || ||||| || |||| |||||| | |||||||||||||| || | | Sbjct 1152 CACGCCCAGGCCGATGTCGCCCGACCGCTGGTACATTTGGCACGAGAGCTCGCCCTTGGA 1093 Query 29833 CACGTAAAACTG---ACACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTT 29889 |||||||||||| ||||| ||||| || || ||||||||||| || | Sbjct 1092 CACGTAAAACTGCGCGAACATG---TGGCAGGGCGGCAGGGCCATGAGGTGGAACGCCGC 1036 Query 29890 GGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCAC 29949 ||||||||||| | | ||| ||||| | ||| ||||| | ||||| || ||| Sbjct 1035 CGGGTTCCAGGCCGAGAGGATCATGCGGCGGTCCGTCGGGTTCGTTTTGATGGTGTGCAC 976 Query 29950 GGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTGNNNNNNNNNNNNNNNNNN 30008 | | || ||||| || || ||| || | ||| || Sbjct 975 -AAGCTGCGCGAGCTGGTCTACGCCCTGGCCGGCGTACTCGTCGTGCATGGTCTTGTACT 917 Query 30009 NNNNNNCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGT 30068 | || || | ||||||||| ||||| || || || || || ||||| || | | Sbjct 916 CGGCGCCAAAGTGGCGCCACTGGAAGCCGTAAACGGGGCCGAGATCGCCCTCCTCGCGAT 857 Query 30069 GCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCC 30128 | || ||| ||||||| | | | | ||| |||||| ||||||| || | | Sbjct 856 CCGTGAGGCCGATCTTGTCAAGGTACGCGCGGGACCCGTTGCCGTCCCAAATGTGAATGT 797 Query 30129 CCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCA 30188 |||| || ||| |||| | | ||| || || |||||| ||||| ||||| Sbjct 796 CCTTTTCCTGCAGCGACTTGGCGCTGGTGTCGCCCGAGATGAACCAGAGCAGTTCCTCGG 737 Query 30189 CGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30228 ||||| | ||||||||| | ||||||||| || || || Sbjct 736 CGACGCCGCGCCAAAAGACGCGCTTGGTCGTCAGCAGCGG 697 >seq8122 Length=2121 Score = 111 bits (122), Expect = 1e-19 Identities = 159/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 49871 TCTCGAGCACGAGCTGGGCTATCCTGTCGCCCCTCTCGACCCGAAAGGCATCACACCCAA 49930 |||||||||||||||| || ||||||||||| || ||| | ||| || || Sbjct 1756 TCTCGAGCACGAGCTGCGCGATCCTGTCGCCGACCTTGACGTCGAGGGCCTCGTCGCCGT 1697 Query 49931 AGTTAAACAGTATGACGCCGAGGTTGCCCCTGTAGTCGGGGTCCACCACCCCGGCACCGA 49990 ||| || || | |||||||| ||| || | ||||||| |||| | || || || |||| Sbjct 1696 GGTTGAAGAGCACGACGCCGACGTTTCCGCGGTAGTCGCGGTCGATGACGCCCGCGCCGA 1637 Query 49991 CGTCTATAAACTTTTTCAGGGCCAGGCCGGACCTGGGAGCCACCCTGCCGTAGAGGCCCG 50050 |||| || ||| ||| || || || |||| || ||||| | ||||||| ||||| Sbjct 1636 CGTCGATGTGCTTCTTCCACGCGAGCCCCGACCGCGGCGCCACGCGGCCGTAGGTGCCCG 1577 Query 50051 GGGGCATCTTCACGGCAAGGTCCGTCTTTACCAGGGCCCTGCCG 50094 ||| | || ||||| | ||| ||||| || || || ||||| Sbjct 1576 CGGGGACCTGGACGGCCACGTCGGTCTTGACGAGCCCCTTGCCG 1533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406109916972904