Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1 _202017-05-22] 10,764 sequences; 18,099,857 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq7460 168 5e-37 seq8122 105 5e-18 >seq7460 Length=1425 Score = 168 bits (186), Expect = 5e-37 Identities = 422/636 (66%), Gaps = 4/636 (1%) Strand=Plus/Minus Query 27089 TGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTT 27148 |||| ||| | || |||| ||||| | ||||| | | ||||| ||| || || | Sbjct 1330 TGTTGATCTTGAGCTTGGGGAAGGGGCGCGGCTCGCGGTTAAGCTGTTCCTTGAGGGGCT 1271 Query 27149 CCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCT- 27207 | ||||| | ||| | ||| ||| || | | ||||| ||||| ||||| | Sbjct 1270 CGACGTGGTTTTTGTAAATGTGGCAGTCGCCGATGACGTGGATGAACTC-CCCGGCGCGC 1212 Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || |||||| | || | || | |||||| || | ||| ||| ||||| ||||| Sbjct 1211 AGGCCGGTGCACTTTGCGAGCAGATGCGTGAGAAGCGCGTACGAGGCAATGTTGAAGGGC 1152 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || || || || ||||| ||||||| |||||| | || ||||||||||| || | | Sbjct 1151 ACGCCCAGGCCGATGTCGCCCGACCGCTGGTACATTTGGCACGAGAGCTCGCCCTTGGAC 1092 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGG 27387 ||||||||||| | |||||| || || || ||||||||| || | ||| Sbjct 1091 ACGTAAAACTGCGCGAACATGTGGCAGGGCGGCAGGGCCATGAGGTGGAACGCCGCCGGG 1032 Query 27388 TTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCG 27447 |||||||| | | ||| ||||| | ||| ||||| | ||||| || ||| | Sbjct 1031 TTCCAGGCCGAGAGGATCATGCGGCGGTCCGTCGGGTTCGTTTTGATGGTGTGCAC-AAG 973 Query 27448 TTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGC 27506 | || ||||| || || ||| || | ||| || | |||| | ||||||| || Sbjct 972 CTGCGCGAGCTGGTCTACGCCCTGGCCGGCGTACTCGTCGTGCATGGTCTTGTACTCGGC 913 Query 27507 TCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTC 27566 || || || | ||| ||||| ||||| || || || || || ||||| || | | | Sbjct 912 GCCAAAGTGGCGCCACTGGAAGCCGTAAACGGGGCCGAGATCGCCCTCCTCGCGATCCGT 853 Query 27567 GAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTT 27626 || ||| ||||||| | | | | ||| |||||| ||||||| || | | |||| Sbjct 852 GAGGCCGATCTTGTCAAGGTACGCGCGGGACCCGTTGCCGTCCCAAATGTGAATGTCCTT 793 Query 27627 CTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGAC 27686 || ||| |||| | | ||| || || |||||| ||||| ||||| |||| Sbjct 792 TTCCTGCAGCGACTTGGCGCTGGTGTCGCCCGAGATGAACCAGAGCAGTTCCTCGGCGAC 733 Query 27687 GGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 27722 | | ||||||||| | ||||||||| || || || Sbjct 732 GCCGCGCCAAAAGACGCGCTTGGTCGTCAGCAGCGG 697 >seq8122 Length=2121 Score = 105 bits (116), Expect = 5e-18 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 44858 TCTCGAGCACGAGCTGGGCTATCCTGTCGCCCCTCTTGACCCGAAAGGGGTTGCACCCAA 44917 |||||||||||||||| || ||||||||||| |||||| | || | | || Sbjct 1756 TCTCGAGCACGAGCTGCGCGATCCTGTCGCCGACCTTGACGTCGAGGGCCTCGTCGCCGT 1697 Query 44918 AGTTAAACAGTATGACGCCGAGGTTGCCCCTGTAGTCGGGGTCCACCACCCCGGCACCGA 44977 ||| || || | |||||||| ||| || | ||||||| |||| | || || || |||| Sbjct 1696 GGTTGAAGAGCACGACGCCGACGTTTCCGCGGTAGTCGCGGTCGATGACGCCCGCGCCGA 1637 Query 44978 CGTCTATAAAATTTTTCAGGGCCAGGCCGGACCTGGGAGCCACCCTGCCGTAGAGGCCCG 45037 |||| || || ||| || || || |||| || ||||| | ||||||| ||||| Sbjct 1636 CGTCGATGTGCTTCTTCCACGCGAGCCCCGACCGCGGCGCCACGCGGCCGTAGGTGCCCG 1577 Query 45038 GGGGCATCTTCACGACCAGGTCCGTCTTTACCAGGGCCCTGCC 45080 ||| | || ||| ||| ||| ||||| || || || |||| Sbjct 1576 CGGGGACCTGGACGGCCACGTCGGTCTTGACGAGCCCCTTGCC 1534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369458725736084