Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1 _202017-05-22] 10,764 sequences; 18,099,857 total letters Query= NC_031058.1 Length=58566 Score E Sequences producing significant alignments: (Bits) Value seq6165 87.8 7e-13 >seq6165 Length=720 Score = 87.8 bits (96), Expect = 7e-13 Identities = 189/275 (69%), Gaps = 6/275 (2%) Strand=Plus/Minus Query 31005 CCATGCACATGTG-TCGCGCCTTAATGACCACACCGACGCCCTTGGCTTCCAGGTGCTCG 31063 ||||||||||||| ||| |||| |||| || ||||||||| || || ||| ||| Sbjct 604 CCATGCACATGTGCTCG-GCCTCGATGATGACGGCGACGCCCTGGGGGTCGAGGATCTCC 546 Query 31064 AACAGTGCGTCCGCGATCTGGTCTGTGAGCCGTTCCTGCACTTGCAGGCGGCGAGCATAC 31123 | | || || |||||||| |||||| || ||||| || || ||||| || || || Sbjct 545 ATGATGGCCTCGGCGATCTGCGTTGTGAGGCGCTCCTGGACCTGGAGGCGACGCGCGAAC 486 Query 31124 ATGTCCGCCAGGCGGGACAGCTTGCTCAGGCCCACGATACGACCGTTCGGAATGTAGCTG 31183 || || | ||| | |||||| ||||| | ||| || | || || ||||| | Sbjct 485 ATCTCGCTGACGCGCGCGAGCTTGGAAAGGCCGAGGATGCGGCGCTTGGGGATGTAACCA 426 Query 31184 ATCGTGAC-CGTGCCGAAGATCGGCGCGAGGTGATGCTCGCA-ATGTGAGTAGATGGGGA 31241 || ||| | | |||| || ||| ||||||| |||||||| ||| || ||| | || Sbjct 425 AT-GTGGCACTTGCCCTTGAAGGGCACGAGGTGGTGCTCGCACATG-GAAAAGAGGTCGA 368 Query 31242 TGTCGCGCACCGTCACCATCTGGTCATGCTTCTCC 31276 |||| || | ||||||| || || | |||| Sbjct 367 TGTCTTTGACGATGACCATCTCGTGGTGGTCCTCC 333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 187265660175104