Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1
_202017-05-22] 10,764 sequences; 18,099,857 total letters
Query= NC_031074.1
Length=92580
Score E
Sequences producing significant alignments: (Bits) Value
seq7460 109 3e-19
>seq7460
Length=1425
Score = 109 bits (120), Expect = 3e-19
Identities = 263/385 (68%), Gaps = 21/385 (5%)
Strand=Plus/Plus
Query 1204 CATGGCACTTCACCCGTGCCACATCATGTTC---CAGCTGTACGTCGTCGACGGCCG-GC 1259
|||||| || | || |||||||| |||| ||| | ||||| ||| | || || ||
Sbjct 1050 CATGGCCCTGCCGCCCTGCCACAT---GTTCGCGCAGTTTTACGT-GTCCAAGGGCGAGC 1105
Query 1260 TCTCGCTGCAGGTCTACCAGCGCAGCGCGGACATGTTCCTCGGTGTGCCGTTCAATATCG 1319
||||| || | |||||||| | ||||| ||| || ||||| ||||| || |
Sbjct 1106 TCTCGTGCCAAATGTACCAGCGGTCGGGCGACATCGGCCTGGGCGTGCCCTTCAACATTG 1165
Query 1320 CCTCGTACGCGCTCCTCGCGCACATGTTCGCGCAGCAGGCCGGCCTGCGGGTGGGTGAGC 1379
||||||||||||| ||| |||| || |||| || |||||||||| | || |||
Sbjct 1166 CCTCGTACGCGCTTCTCACGCATCTGCTCGCAAAGTGCACCGGCCTGCGCGCCGGGGAGT 1225
Query 1380 TGATCTGGACCGGCGGCGACTGCCACATCTACAACAACCACGTCGACCAGGCGCTGATG- 1438
| ||| | ||||||||||||||| ||||| |||||||||| || | || | |
Sbjct 1226 TCATCCACGTCATCGGCGACTGCCACATTTACAAAAACCACGTCG---AGCCCCTCAAGG 1282
Query 1439 --CAGCTCCGCCGACGA-CCGCGGCCCTACCCGAGGCTC--GTGCTACACC-AC-GCGCC 1491
||||| ||| ||| ||||| |||| ||| | |||| | | ||||| || | ||
Sbjct 1283 AACAGCTTAACCG-CGAGCCGCGCCCCTTCCCCAAGCTCAAGATCAACACCGACAACACC 1341
Query 1492 GTCGATCTTCGACTACCGGTACGAGCACATCCACCTCGTGAACTACGACCCGCACCCGTC 1551
| | ||| || || | ||||||| || || | || ||| ||| | || ||| | |
Sbjct 1342 GAC-ATCGACGGCTTCAAGTACGAGGACCTCGAACTTGTGGGGTACAAGCCCCACAAGAC 1400
Query 1552 GATCAAGGCGCCGGTGGCCGTCTGA 1576
|||||| | || ||||||||
Sbjct 1401 CATCAAGATGGACATGTCCGTCTGA 1425
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 296092351658364
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |