Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1 _202017-05-22] 10,764 sequences; 18,099,857 total letters Query= NC_031074.1 Length=92580 Score E Sequences producing significant alignments: (Bits) Value seq7460 109 3e-19 >seq7460 Length=1425 Score = 109 bits (120), Expect = 3e-19 Identities = 263/385 (68%), Gaps = 21/385 (5%) Strand=Plus/Plus Query 1204 CATGGCACTTCACCCGTGCCACATCATGTTC---CAGCTGTACGTCGTCGACGGCCG-GC 1259 |||||| || | || |||||||| |||| ||| | ||||| ||| | || || || Sbjct 1050 CATGGCCCTGCCGCCCTGCCACAT---GTTCGCGCAGTTTTACGT-GTCCAAGGGCGAGC 1105 Query 1260 TCTCGCTGCAGGTCTACCAGCGCAGCGCGGACATGTTCCTCGGTGTGCCGTTCAATATCG 1319 ||||| || | |||||||| | ||||| ||| || ||||| ||||| || | Sbjct 1106 TCTCGTGCCAAATGTACCAGCGGTCGGGCGACATCGGCCTGGGCGTGCCCTTCAACATTG 1165 Query 1320 CCTCGTACGCGCTCCTCGCGCACATGTTCGCGCAGCAGGCCGGCCTGCGGGTGGGTGAGC 1379 ||||||||||||| ||| |||| || |||| || |||||||||| | || ||| Sbjct 1166 CCTCGTACGCGCTTCTCACGCATCTGCTCGCAAAGTGCACCGGCCTGCGCGCCGGGGAGT 1225 Query 1380 TGATCTGGACCGGCGGCGACTGCCACATCTACAACAACCACGTCGACCAGGCGCTGATG- 1438 | ||| | ||||||||||||||| ||||| |||||||||| || | || | | Sbjct 1226 TCATCCACGTCATCGGCGACTGCCACATTTACAAAAACCACGTCG---AGCCCCTCAAGG 1282 Query 1439 --CAGCTCCGCCGACGA-CCGCGGCCCTACCCGAGGCTC--GTGCTACACC-AC-GCGCC 1491 ||||| ||| ||| ||||| |||| ||| | |||| | | ||||| || | || Sbjct 1283 AACAGCTTAACCG-CGAGCCGCGCCCCTTCCCCAAGCTCAAGATCAACACCGACAACACC 1341 Query 1492 GTCGATCTTCGACTACCGGTACGAGCACATCCACCTCGTGAACTACGACCCGCACCCGTC 1551 | | ||| || || | ||||||| || || | || ||| ||| | || ||| | | Sbjct 1342 GAC-ATCGACGGCTTCAAGTACGAGGACCTCGAACTTGTGGGGTACAAGCCCCACAAGAC 1400 Query 1552 GATCAAGGCGCCGGTGGCCGTCTGA 1576 |||||| | || |||||||| Sbjct 1401 CATCAAGATGGACATGTCCGTCTGA 1425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 296092351658364