Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1
_202017-05-22] 10,764 sequences; 18,099,857 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq7528 165 2e-35
seq3754 163 6e-35
seq8082 161 2e-34
seq5348 152 1e-31
>seq7528
Length=2088
Score = 165 bits (182), Expect = 2e-35
Identities = 175/228 (77%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
||||| ||||||||||| || || || | ||| || || ||||||||||||||
Sbjct 1139 CCACCGCGCAGGCGAAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTG 1080
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
||||||||||| ||||| || || || || || ||||| | ||| ||||| ||| ||
Sbjct 1079 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGTTGATCAGGGGGG 1020
Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|| ||||||||||| |||||||| ||| || ||| | ||||| |||||||| | |||||
Sbjct 1019 ATGCCCTCCTTGTCCTGGATCTTCTGC-TTCACGTTCTCGATGGTGTCCGAGGGCTCGAC 961
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| || ||||| ||||| || || | ||||| ||||| ||||||||
Sbjct 960 ATCAAGGGTGATGGTCTTCCCGGTGAGCGTCTTGACGAAGATCTGCAT 913
Score = 163 bits (180), Expect = 6e-35
Identities = 175/229 (76%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
|||||| |||||||| || ||||| || | ||| || || ||||||||||||||
Sbjct 456 ACCACCGCGCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCT 397
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||||||||||| ||||| || || || || || ||||| | || ||||| ||| ||
Sbjct 396 GAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATAAGGCGCTGTTGATCAGGGGG 337
Query 282992 AATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050
|| ||||||||||| |||||||| ||| || ||| | ||||| |||||||| | ||||
Sbjct 336 GATGCCCTCCTTGTCCTGGATCTTCTGC-TTCACGTTCTCGATGGTGTCCGAGGGCTCGA 278
Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
| ||||| ||||| ||||| || || | ||||| || || ||||||||
Sbjct 277 CATCGAGGGTGATGGTCTTGCCGGTGAGCGTCTTGACAAAGATCTGCAT 229
Score = 161 bits (178), Expect = 2e-34
Identities = 174/228 (76%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
||||| |||||||| || || || || | ||| || || |||||||||||||||
Sbjct 911 CCACCGCGCAGGCGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCACTG 852
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
||||||||||| || || || || || || || ||||| | ||| ||||| ||| ||
Sbjct 851 AGCGTGCGGCCGTCTTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGTTGATCAGGGGGG 792
Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|| ||||||||||| |||||||| ||| || ||| | ||||| |||||||| | |||||
Sbjct 791 ATGCCCTCCTTGTCCTGGATCTTCTGC-TTCACGTTCTCGATGGTGTCCGAGGGCTCGAC 733
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| || ||||| ||||| || || | ||||| ||||| ||||||||
Sbjct 732 ATCAAGGGTGATGGTCTTCCCGGTGAGCGTCTTGACGAAGATCTGCAT 685
Score = 156 bits (172), Expect = 9e-33
Identities = 173/228 (76%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
||||| |||||||| || ||||| || | ||| || || ||||||||||||||
Sbjct 227 CCACCGCGCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTG 168
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
||||||||||| || || || || || ||||| || || | ||| ||||| ||| ||
Sbjct 167 AGCGTGCGGCCGTCTTCGAGCTGCTTGCCGGCGAAAATAAGACGCTGTTGATCAGGGGGG 108
Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|| ||||||||||| |||||||| ||| || || | ||||| |||||||| | |||||
Sbjct 107 ATGCCCTCCTTGTCCTGGATCTTCTGC-TTCACATTCTCGATGGTGTCCGAGGGCTCGAC 49
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||||| ||||| ||||| || || | ||||| || || ||||||||
Sbjct 48 ATCGAGCGTGATGGTCTTGCCGGTGAGCGTCTTGACAAAGATCTGCAT 1
Score = 147 bits (162), Expect = 5e-30
Identities = 171/228 (75%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
||||| |||||||| || || || || | ||| || || |||||||||||||||
Sbjct 683 CCACCGCGCAGGCGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCACTG 624
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
||||||||||| || || || || || ||||| || || | ||| || || ||| |||
Sbjct 623 AGCGTGCGGCCGTCTTCGAGCTGCTTGCCGGCGAAAATAAGACGCTGCTGATCAGGGGGA 564
Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|| ||||||||||| |||||||| ||||| ||| | ||||| ||||| | || ||
Sbjct 563 ATGCCCTCCTTGTCCTGGATCTTCTGCTTC-ACGTTCTCGATGGTGTCGCTGGGCTCAAC 505
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||||||||||| ||||| || || | ||||| || || ||||||||
Sbjct 504 GTCGAGAGTGATGGTCTTGCCGGTGAGCGTCTTGACAAAGATCTGCAT 457
>seq3754
Length=471
Score = 163 bits (180), Expect = 6e-35
Identities = 175/229 (76%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| ||||| || ||||| || | || || || |||||||| |||||
Sbjct 228 ACCACCACGGAGGCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTATAGTCGCT 169
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||||||||||| ||||| || || || ||||| ||||| | || ||||| ||| ||
Sbjct 168 CAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGGCGCTGTTGATCAGGGGG 109
Query 282992 AATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050
|| ||||||||||| |||||||| ||| || || | ||||| |||||||| | ||||
Sbjct 108 GATGCCCTCCTTGTCCTGGATCTTCTGC-TTCACATTCTCGATGGTGTCCGAGGGCTCGA 50
Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
| ||||| ||||| ||||| ||||| | ||||| ||||| ||||||||
Sbjct 49 CATCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 1
>seq8082
Length=462
Score = 161 bits (178), Expect = 2e-34
Identities = 172/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|| || || ||||| || || || || | ||| || || ||||||||||||||
Sbjct 227 CCGCCGCGGAGGCGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTG 168
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
||||||||||| ||||| || || || ||||| ||||| | || ||||| ||| ||
Sbjct 167 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGGCGCTGTTGATCAGGGGGG 108
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| ||||||||||| || ||||| | || ||| | ||||| |||||||| | |||||
Sbjct 107 ATGCCCTCCTTGTCCTGAATCTTGGACTTCACGTTCTCGATCGTGTCCGAGGGCTCGACA 48
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||||| ||||| ||||||||||| | ||||| ||||| ||||||||
Sbjct 47 TCGAGGGTGATGGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 1
>seq5348
Length=435
Score = 152 bits (168), Expect = 1e-31
Identities = 171/226 (76%), Gaps = 2/226 (1%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
|||||| || ||||| || || || || | ||| || || ||||||||||| ||
Sbjct 276 ACCACCGCGGAGGCGGAGCACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCGCT 217
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||||||||||| ||||| || || || ||||| ||||| | || ||||| ||| ||
Sbjct 216 GAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGTTGATCAGGGGG 157
Query 282992 AATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050
|| ||||||||||| || ||||| ||||| ||| | ||||| |||||||| | ||||
Sbjct 156 GATGCCCTCCTTGTCCTGAATCTTCTGCTTC-ACGTTCTCGATGGTGTCCGAGGGCTCGA 98
Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTG 283096
| ||||| ||||| ||||||||||| | ||||| || || |||||
Sbjct 97 CATCGAGGGTGATAGTCTTACCCGTGAGGGTCTTTACAAAGATCTG 52
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046594840271656
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