Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1 _202017-05-22] 10,764 sequences; 18,099,857 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq7528 165 2e-35 seq3754 163 6e-35 seq8082 161 2e-34 seq5348 152 1e-31 >seq7528 Length=2088 Score = 165 bits (182), Expect = 2e-35 Identities = 175/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| ||||||||||| || || || | ||| || || |||||||||||||| Sbjct 1139 CCACCGCGCAGGCGAAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTG 1080 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || || || ||||| | ||| ||||| ||| || Sbjct 1079 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGTTGATCAGGGGGG 1020 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| ||| || ||| | ||||| |||||||| | ||||| Sbjct 1019 ATGCCCTCCTTGTCCTGGATCTTCTGC-TTCACGTTCTCGATGGTGTCCGAGGGCTCGAC 961 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| || || | ||||| ||||| |||||||| Sbjct 960 ATCAAGGGTGATGGTCTTCCCGGTGAGCGTCTTGACGAAGATCTGCAT 913 Score = 163 bits (180), Expect = 6e-35 Identities = 175/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| |||||||| || ||||| || | ||| || || |||||||||||||| Sbjct 456 ACCACCGCGCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCT 397 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||||||||| ||||| || || || || || ||||| | || ||||| ||| || Sbjct 396 GAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATAAGGCGCTGTTGATCAGGGGG 337 Query 282992 AATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 || ||||||||||| |||||||| ||| || ||| | ||||| |||||||| | |||| Sbjct 336 GATGCCCTCCTTGTCCTGGATCTTCTGC-TTCACGTTCTCGATGGTGTCCGAGGGCTCGA 278 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | ||||| ||||| ||||| || || | ||||| || || |||||||| Sbjct 277 CATCGAGGGTGATGGTCTTGCCGGTGAGCGTCTTGACAAAGATCTGCAT 229 Score = 161 bits (178), Expect = 2e-34 Identities = 174/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| |||||||| || || || || | ||| || || ||||||||||||||| Sbjct 911 CCACCGCGCAGGCGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCACTG 852 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| || || || || || || || ||||| | ||| ||||| ||| || Sbjct 851 AGCGTGCGGCCGTCTTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGTTGATCAGGGGGG 792 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| ||| || ||| | ||||| |||||||| | ||||| Sbjct 791 ATGCCCTCCTTGTCCTGGATCTTCTGC-TTCACGTTCTCGATGGTGTCCGAGGGCTCGAC 733 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| || || | ||||| ||||| |||||||| Sbjct 732 ATCAAGGGTGATGGTCTTCCCGGTGAGCGTCTTGACGAAGATCTGCAT 685 Score = 156 bits (172), Expect = 9e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| |||||||| || ||||| || | ||| || || |||||||||||||| Sbjct 227 CCACCGCGCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTG 168 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| || || || || || ||||| || || | ||| ||||| ||| || Sbjct 167 AGCGTGCGGCCGTCTTCGAGCTGCTTGCCGGCGAAAATAAGACGCTGTTGATCAGGGGGG 108 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| ||| || || | ||||| |||||||| | ||||| Sbjct 107 ATGCCCTCCTTGTCCTGGATCTTCTGC-TTCACATTCTCGATGGTGTCCGAGGGCTCGAC 49 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| || || | ||||| || || |||||||| Sbjct 48 ATCGAGCGTGATGGTCTTGCCGGTGAGCGTCTTGACAAAGATCTGCAT 1 Score = 147 bits (162), Expect = 5e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| |||||||| || || || || | ||| || || ||||||||||||||| Sbjct 683 CCACCGCGCAGGCGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCACTG 624 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| || || || || || ||||| || || | ||| || || ||| ||| Sbjct 623 AGCGTGCGGCCGTCTTCGAGCTGCTTGCCGGCGAAAATAAGACGCTGCTGATCAGGGGGA 564 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| ||||| ||| | ||||| ||||| | || || Sbjct 563 ATGCCCTCCTTGTCCTGGATCTTCTGCTTC-ACGTTCTCGATGGTGTCGCTGGGCTCAAC 505 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||||||||| ||||| || || | ||||| || || |||||||| Sbjct 504 GTCGAGAGTGATGGTCTTGCCGGTGAGCGTCTTGACAAAGATCTGCAT 457 >seq3754 Length=471 Score = 163 bits (180), Expect = 6e-35 Identities = 175/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || ||||| || | || || || |||||||| ||||| Sbjct 228 ACCACCACGGAGGCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTATAGTCGCT 169 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||||||||| ||||| || || || ||||| ||||| | || ||||| ||| || Sbjct 168 CAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGGCGCTGTTGATCAGGGGG 109 Query 282992 AATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 || ||||||||||| |||||||| ||| || || | ||||| |||||||| | |||| Sbjct 108 GATGCCCTCCTTGTCCTGGATCTTCTGC-TTCACATTCTCGATGGTGTCCGAGGGCTCGA 50 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | ||||| ||||| ||||| ||||| | ||||| ||||| |||||||| Sbjct 49 CATCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 1 >seq8082 Length=462 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || || ||||| || || || || | ||| || || |||||||||||||| Sbjct 227 CCGCCGCGGAGGCGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTG 168 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || ||||| ||||| | || ||||| ||| || Sbjct 167 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGGCGCTGTTGATCAGGGGGG 108 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| || ||||| | || ||| | ||||| |||||||| | ||||| Sbjct 107 ATGCCCTCCTTGTCCTGAATCTTGGACTTCACGTTCTCGATCGTGTCCGAGGGCTCGACA 48 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||||||||| | ||||| ||||| |||||||| Sbjct 47 TCGAGGGTGATGGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 1 >seq5348 Length=435 Score = 152 bits (168), Expect = 1e-31 Identities = 171/226 (76%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || ||||| || || || || | ||| || || ||||||||||| || Sbjct 276 ACCACCGCGGAGGCGGAGCACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCGCT 217 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||||||||| ||||| || || || ||||| ||||| | || ||||| ||| || Sbjct 216 GAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGTTGATCAGGGGG 157 Query 282992 AATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 || ||||||||||| || ||||| ||||| ||| | ||||| |||||||| | |||| Sbjct 156 GATGCCCTCCTTGTCCTGAATCTTCTGCTTC-ACGTTCTCGATGGTGTCCGAGGGCTCGA 98 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTG 283096 | ||||| ||||| ||||||||||| | ||||| || || ||||| Sbjct 97 CATCGAGGGTGATAGTCTTACCCGTGAGGGTCTTTACAAAGATCTG 52 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046594840271656