Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1 _202017-05-22] 10,764 sequences; 18,099,857 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq7528 138 8e-28 seq5348 138 8e-28 seq3754 136 3e-27 seq8082 125 5e-24 >seq7528 Length=2088 Score = 138 bits (152), Expect = 8e-28 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | | ||||||||| || ||| |||||| ||||||||||| || Sbjct 231 CATGCCACCGCGCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 172 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| ||| |||| || |||||||| ||||| || || | |||||| ||||| | Sbjct 171 GCTGAGCGTGCGGCCGTCTTCGAGCTGCTTGCCGGCGAAAATAAGACGCTGTTGATCAGG 112 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | || ||||| ||| ||||||||||||| | | |||||||| | || || Sbjct 111 GGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACATTCTCGATGGTGTCCGAGGGCTC 52 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | ||| || ||||| || ||||| ||||| || ||||| ||||| Sbjct 51 GACATCGAGCGTGATGGTCTTGCCGGTGAGCGTCTTGACAAAGATCTGCAT 1 Score = 138 bits (152), Expect = 8e-28 Identities = 172/233 (74%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 || ||| || | ||| | | ||| ||||| || ||| |||||| ||||||||||| || Sbjct 1143 CAGTCCACCGCGCAGGCGAAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 1084 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| ||| |||| || |||||||| || || ||||| | |||||| ||||| | Sbjct 1083 GCTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGTTGATCAGG 1024 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | || ||||| ||| |||||||||||| | |||| | |||||||| | || | Sbjct 1023 GGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC-ACGTTCTCGATGGTGTCCGAGGGCT 965 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | || || | || || ||||| || ||||| ||||| |||||||| |||||| Sbjct 964 CGACATCAAGGGTGATGGTCTTCCCGGTGAGCGTCTTGACGAAGATCTGCATG 912 Score = 134 bits (148), Expect = 1e-26 Identities = 171/233 (73%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | | ||||||||| || ||| |||||| ||||||||||| || Sbjct 459 CATACCACCGCGCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 400 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| ||| |||| || |||||||| || || ||||| | ||||| ||||| | Sbjct 399 GCTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATAAGGCGCTGTTGATCAGG 340 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | || ||||| ||| |||||||||||| | |||| | |||||||| | || | Sbjct 339 GGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC-ACGTTCTCGATGGTGTCCGAGGGCT 281 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | || || | || || ||||| || ||||| ||||| || ||||| |||||| Sbjct 280 CGACATCGAGGGTGATGGTCTTGCCGGTGAGCGTCTTGACAAAGATCTGCATG 228 Score = 134 bits (148), Expect = 1e-26 Identities = 171/233 (73%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | | ||| ||||| || ||| |||||| ||||||||||| || Sbjct 915 CATGCCACCGCGCAGGCGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 856 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 ||| ||| |||| || |||||||| || || ||||| | |||||| ||||| | Sbjct 855 ACTGAGCGTGCGGCCGTCTTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGTTGATCAGG 796 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | || ||||| ||| |||||||||||| | |||| | |||||||| | || | Sbjct 795 GGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC-ACGTTCTCGATGGTGTCCGAGGGCT 737 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | || || | || || ||||| || ||||| ||||| |||||||| |||||| Sbjct 736 CGACATCAAGGGTGATGGTCTTCCCGGTGAGCGTCTTGACGAAGATCTGCATG 684 Score = 132 bits (146), Expect = 3e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | | ||| ||||| || ||| |||||| ||||||||||| || Sbjct 687 CATGCCACCGCGCAGGCGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 628 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 ||| ||| |||| || |||||||| ||||| || || | |||||||||||| | Sbjct 627 ACTGAGCGTGCGGCCGTCTTCGAGCTGCTTGCCGGCGAAAATAAGACGCTGCTGATCAGG 568 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | || ||||| ||| |||||||||||| | |||| | ||||||||| || | Sbjct 567 GGGAATGCCCTCCTTGTCCTGGATCTTCTGCTTC-ACGTTCTCGATGGTGTCGCTGGGCT 509 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || | || || ||||| || ||||| ||||| || ||||| ||||| Sbjct 508 CAACGTCGAGAGTGATGGTCTTGCCGGTGAGCGTCTTGACAAAGATCTGCAT 457 >seq5348 Length=435 Score = 138 bits (152), Expect = 8e-28 Identities = 157/208 (75%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| ||||| || ||| |||||| ||||||||||||||| ||| ||| |||| || Sbjct 258 CACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCGCTGAGCGTGCGGCCGTCCTC 199 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| ||||| ||||| | ||||| ||||| | || | || ||||| ||| Sbjct 198 GAGCTGCTTGCCGGCGAAGATGAGGCGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTG 139 Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||||||||||| |||| | |||||||| | || || || || | || || |||| Sbjct 138 AATCTTCTGCTTCAC-GTTCTCGATGGTGTCCGAGGGCTCGACATCGAGGGTGATAGTCT 80 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTG 44334 | |||||||||||||| || ||||| || Sbjct 79 TACCCGTGAGGGTCTTTACAAAGATCTG 52 >seq3754 Length=471 Score = 136 bits (150), Expect = 3e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||||||| || || |||||| |||||||| || ||| || ||| |||| || Sbjct 210 CACCAGGTGGAGGGTCGACTCCTTCTGGATGTTATAGTCGCTCAGCGTGCGGCCGTCCTC 151 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| ||||| ||||| | ||||| ||||| | || | || ||||| ||| Sbjct 150 GAGCTGCTTGCCGGCGAAGATAAGGCGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTG 91 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||||||||||| | | |||||||| | || || || || | || || ||||| Sbjct 90 GATCTTCTGCTTCACATTCTCGATGGTGTCCGAGGGCTCGACATCGAGGGTGATAGTCTT 31 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||||||||||||||||||| ||||| Sbjct 30 GCCCGTGAGGGTCTTCACGAAGATCTGCAT 1 >seq8082 Length=462 Score = 125 bits (138), Expect = 5e-24 Identities = 156/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| ||||| || ||| |||||| ||||||||||| ||| ||| ||| |||| || Sbjct 210 CACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTC 151 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| ||||| ||||| | ||||| ||||| | || | || ||||| ||| Sbjct 150 GAGCTGCTTGCCGGCGAAGATAAGGCGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTG 91 Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||||| |||| | || ||||| | || || || || | || || |||| Sbjct 90 AATCTTGGACTTCAC-GTTCTCGATCGTGTCCGAGGGCTCGACATCGAGGGTGATGGTCT 32 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | |||||||||||||| |||||||| ||||| Sbjct 31 TACCCGTGAGGGTCTTGACGAAGATCTGCAT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359943174209388