Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq2102 123 5e-23 seq2584 122 2e-22 seq1768 118 2e-21 seq778 86.0 1e-11 seq541 86.0 1e-11 seq370 86.0 1e-11 >seq2102 Length=15428 Score = 123 bits (136), Expect = 5e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 319815 GAGATCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAGAGGGGAACCCTTCAAGCTG 319874 ||| | |||||| ||||| |||| || | ||||| || ||||| |||||||| || Sbjct 11692 GAGGTTGTGTTCAACGTACACAGTCTTAAGTTCATCCTTGGAAGGGAATCCTTCAAGTTG 11751 Query 319875 GCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCCGTTTGGCCCACACAGACC 319934 ||| || |||| || ||||| ||||| |||||||| |||||||| || || ||||| Sbjct 11752 GCCATTGGCAATGGCACGCATGAGGGTGGATTTACCACAACCGTTTGGACCGCAAAGACC 11811 Query 319935 GTAGCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAGAAGAATTTTTCCACCATA 319994 |||||| | || || ||||| | || | ||||| || | ||| | ||||| || Sbjct 11812 GTAGCGATGACCCTTCTTGAGGTTCATGCGGGCATTGTTGAGCAAAATCATACCACCGTA 11871 Query 319995 TGCCAGAGAAAATTCACAATCACACAGATCCTCACC 320030 || || || ||||||||||| || || || ||||| Sbjct 11872 AGCGAGGGAGAATTCACAATCGCAAAGGTCATCACC 11907 Score = 91.5 bits (100), Expect = 3e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 318991 TCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGA 319050 || || |||||||| || |||||||||| || || || |||| | || || | Sbjct 10874 TCCTTATCTTCACCAGATTGGAAACGCCATTGAATGTATTGATTGGCAGAGATATCCAAG 10933 Query 319051 TGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGC 319110 || | || ||||||||||||||||| || || || || |||| ||||||| || ||| Sbjct 10934 TGTTGTTCAATGTGGTGGAAAGCATGTTGAGCGACATAGGCAAAACGCATAGCAGGGTGC 10993 Query 319111 TTCCAAACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCTT 319170 ||||| ||| |||| || | || ||| || || | || |||||| | ||| | Sbjct 10994 TTCCACACAGTACCTTCAGTAGGCTCGGTTTCCCCAGTCAACATCTTAATCATGGTAGAT 11053 Query 319171 TTCCCCGCACCGTTT 319185 || || ||||||||| Sbjct 11054 TTACCAGCACCGTTT 11068 >seq2584 Length=5567 Score = 122 bits (134), Expect = 2e-22 Identities = 312/467 (67%), Gaps = 6/467 (1%) Strand=Plus/Minus Query 230171 CGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTT 230230 ||| ||| || ||| | || |||| | ||||||||||||| | ||||| || | Sbjct 3397 CGTATGCAGAACGTATTGTAGCCTTTGCTGCTGTTGAAGGTATTTTCTTTTCAGGATCAT 3338 Query 230231 TCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACG 230290 | ||| | ||||||||||| ||| ||| |||||||||| | | | || |||| Sbjct 3337 TTTGCTCGATCTTTTGGCTCAAGAAACGTGGTTTGATGCCTGGTTTAAGCTTTTCGAACG 3278 Query 230291 AGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTATTCAAAGC 230350 | | || ||| || |||||||| ||| | || | | || |||||||| |||| Sbjct 3277 AACTTATTTCTCGTGATGAGGGTCTTCATTGTGACTTTGCCTGCCTCATGTATTCCAAGC 3218 Query 230351 TCCAGAACAAGCTACCATTCGAGACGG-TCAAACAAATCATTACAGAAGCAGTTGAAAAC 230409 || |||||||| | ||| ||| | | |||| ||| || || |||| || Sbjct 3217 TCATCAACAAGCTTTCTAACGA-ACGTATTCATGAAATTATTGGGGATGCTGTTGCAATT 3159 Query 230410 GAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGAACT 230468 |||||| | || | | || || ||||| || | || ||||| |||||| | || Sbjct 3158 GAAAAGCAATTTGTCTCGGAATCTCTTCCA-GTAGAACTCATTGGTATGAACTCATCTCT 3100 Query 230469 TATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAA 230528 ||| | | ||||| |||||| || || ||| || | || ||||| | | | Sbjct 3099 CATGTGCGAATACATTGAATTCTGTGCTGATCGCCTTCTCCAAGCCCTTGGAG-CTACCA 3041 Query 230529 AG-TGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGA 230587 || | ||||| | ||||| || || | | ||||| | || || |||||||| |||| Sbjct 3040 AGCTTTACAATGCCAAGAATCCATTCGACTGGATGGACATGATATCTCTTCAAGGAAAGA 2981 Query 230588 CCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTG 230634 ||||||| ||||||||||||||| |||| || || | ||||||| Sbjct 2980 CCAACTTTTTCGAAAAGCGTGTCGGTGAATACTCGAAGAGTGGTGTG 2934 >seq1768 Length=20761 Score = 118 bits (130), Expect = 2e-21 Identities = 300/453 (66%), Gaps = 4/453 (1%) Strand=Plus/Plus Query 281559 GGATTATAACTGGGAATGTTAGTAGACCAACCGGTTCCAATACCACTTGAACCATTTACC 281618 |||| | ||| ||||| | || |||||||| || ||||| || | |||||| || Sbjct 1657 GGATGGTGACTTGGAATACTTGTGGACCAACCTGTACCAATGCCCTCGGTACCATTGACA 1716 Query 281619 AAAATACTCGGGATAATAGGTACATAACATTCTGGTTCAATTTTATCACCATCATCATAC 281678 | | | || | ||| ||||||||| | ||| || | | || |||||||||||| Sbjct 1717 AGCAACATTGGTAAAATTGGTACATAATACGTTGGCTCTACTGGTTCTCCATCATCATAC 1776 Query 281679 AAATACTTCAGAAGGTTATCATCTGTATCGACGAAAACCTGTCGCGTCTTAGGGTTCAGT 281738 | ||||| || ||| |||||| || |||| | || || | || || Sbjct 1777 ATATACTCCAAAAGTGGTTCATCTTCCTCTGGAAAAATCAACCGTGTGTACTTGTGCAAA 1836 Query 281739 TTCGTGAAGATATACCTTGCACTCGCGTGGTCTTTACCACCCTGCAGCCTCGACCCAAAC 281798 | || |||||||||| | |||||| |||||| ||||| || | | | ||||| Sbjct 1837 TAAGTAAAGATATACCGAGGACTCGCAGCGTCTTTGCCACCTTGTAAACGAGTGCCAAAT 1896 Query 281799 TGACCCTCCGGCAACAACCAGTTAATGTTATTGCTCCCGACGTAATCCTGAGCCAGGTTG 281858 || ||| || ||||| ||| ||||| ||| || || || ||||||| ||| Sbjct 1897 TGCCCCGATGGATACAACAGAGGAATATTATTTGCCCCAACATAGTCTTGAGCCATGTTT 1956 Query 281859 ACGATTGTCCCCTGAAGCGATACCTCACCGTGGTGATAGGCGCTGTGTTCGGCAACATAA 281918 | || || | ||||||||| | || || ||||| || ||| ||||||| ||| |||| Sbjct 1957 ATAATGGTACTGTGAAGCGATGCTTCGCCATGGTGGTAAGCGGTGTGTTCTGCACAATAA 2016 Query 281919 CCACTGAACTGTGCTACCTTCACGTCTGATGTCAAGTTGCGTTTGAAAGC--GCAATATA 281976 ||| | || || || || | || ||| | || || ||| || || | | | Sbjct 2017 CCAGCAAGTTGAGCAACTTTAATTTCCTTTGTGAGTTTTCG-GCGAAGGCATGCGA-AAA 2074 Query 281977 ATACTTTTCGTTGAGAAGGCTTGAAACCATCAA 282009 |||||| || || |||||||||| |||||||| Sbjct 2075 GTACTTTACGCTGGGAAGGCTTGAGACCATCAA 2107 >seq778 Length=5021 Score = 86.0 bits (94), Expect = 1e-11 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 165711 CCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCC 165770 |||| |||||||||| |||||||||| ||||||||||| ||||||| ||||||||||| Sbjct 11 CCCGGCTAGCTCAGTTGGTAGAGCGCAGGACTTTTAATCCTGTGGTCGCGGGTTCGAGCC 70 Query 165771 CCACGATGGG 165780 || || |||| Sbjct 71 CCGCGTTGGG 80 >seq541 Length=5285 Score = 86.0 bits (94), Expect = 1e-11 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 165711 CCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCC 165770 |||| |||||||||| |||||||||| ||||||||||| ||||||| ||||||||||| Sbjct 22 CCCGGCTAGCTCAGTTGGTAGAGCGCAGGACTTTTAATCCTGTGGTCGCGGGTTCGAGCC 81 Query 165771 CCACGATGGG 165780 || || |||| Sbjct 82 CCGCGTTGGG 91 >seq370 Length=35657 Score = 86.0 bits (94), Expect = 1e-11 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 165711 CCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCC 165770 |||| |||||||||| |||||||||| ||||||||||| ||||||| ||||||||||| Sbjct 84 CCCGGCTAGCTCAGTTGGTAGAGCGCAGGACTTTTAATCCTGTGGTCGCGGGTTCGAGCC 143 Query 165771 CCACGATGGG 165780 || || |||| Sbjct 144 CCGCGTTGGG 153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057751719877790