Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq2584 185 9e-42 >seq2584 Length=5567 Score = 185 bits (204), Expect = 9e-42 Identities = 589/900 (65%), Gaps = 29/900 (3%) Strand=Plus/Plus Query 16668 CCATTCTTTG-GTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGAT 16726 ||| |||| | ||| || | || || |||||||||||||| || || || | |||||| Sbjct 2938 CCACTCTTCGAGTATTCACCGACACGCTTTTCGAAAAAGTTGGTCTTTCCTTGAAGAGAT 2997 Query 16727 ATATTCTCCATGAAATCAAAAGGATTAGTAGC--TGAAAATATTTTAGAGTACC-CCA-- 16781 || | ||||| | || || ||||| | || || ||| || ||| | ||| Sbjct 2998 ATCATGTCCATCCAGTCGAATGGATTCTTGGCATTGTAAAGCTTG----GTAGCTCCAAG 3053 Query 16782 -GTTCGGCGATTAATCTATCCGCTACA-AATTCTATATATTGGCACATTAATTCGCAGTT 16839 | | || || | | ||| || ||| ||||| || |||| |||||| | |||| Sbjct 3054 GGCTTGGAGA--AGGCGATCAGC-ACAGAATTCAATGTATTCGCACATGAGAGATGAGTT 3110 Query 16840 CATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGC 16899 ||| || || || ||| ||||||| ||||| | |||| | | || || |||| || Sbjct 3111 CATACCAATGAGTTCTACTGGAAGAGATTCCGAGACAAATTGCTTTTCAATTGCAACAGC 3170 Query 16900 TTCCTTAATAATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAA--C 16957 ||| |||||| | || ||||| | || | | ||| | || || || | Sbjct 3171 ATCCCCAATAATTTCATGAATACGTTCGTTAGAAAGCTT--GTTGATGAGCTTGGAATAC 3228 Query 16958 ATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAAT 17017 || || || || || || ||||| | ||||| || | ||||||||||| ||||| Sbjct 3229 ATGAGGCAGGCAAAGTCACAATGAAGACCCTCATCACGAGAAATAAGTTCGTTCGAAAAG 3288 Query 17018 GTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAA 17077 | || || |||||| || |||||||| | |||||| |||| | || || || ||| Sbjct 3289 CTTAAACCAGGCATCAAACCACGTTTCTTGAGCCAAAAGATCGAGCAAAATGATCCTGAA 3348 Query 17078 AAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTG 17137 ||||| ||||| || || | ||||| || | | ||||| || |||| || |||| Sbjct 3349 AAGAAAATACCTTCAACAGCAGCAAAGGCTACAATACGTTCTGCATACGCAGCAATTTTG 3408 Query 17138 TTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATG 17197 | |||||| | |||| | ||||| | | || ||| ||||| || || Sbjct 3409 CCATTGCACCATTTAAGAGCCCATTTAGCTTTACGTTGTACACAAGGAATCGTATCAATA 3468 Query 17198 GCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTG 17257 ||| | || | ||||||||| | ||| | ||||| ||||| ||||| | Sbjct 3469 GCCCTCAAAACACGATCTTTTTCCACAATGTCCTTGATATAAGTATCAATGAGCAACGAA 3528 Query 17258 TACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCC 17317 || | ||| || || || || || || || || |||||||| ||||| |||| ||||| Sbjct 3529 TAAACTTCTGAATGAATATTTTCGATAGCAATTTGAAATCCATAAAAACATCTAGCTTCA 3588 Query 17318 GCTATTTGAACTTCCACGTAGAA--TCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGC 17375 | || ||| ||||| | | || || | || | |||||| || || || || || Sbjct 3589 GGTACTTGTACTTCATTGGAAAAATTCAT--GGCCAAATTTTCATTTACAATACCATCCG 3646 Query 17376 TCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTC---GTCCGGTGTAAGAA 17432 || || ||||| ||||||| ||| |||| || || ||| |||| ||||| Sbjct 3647 ATGCTGCAAAAAATGCCAATACATGGGTAATAAAGAATCGTTCATTGTCC---GTAAGTT 3703 Query 17433 CGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCA 17492 ||| || || | ||| | | | ||| | |||||| | |||||||||||||| Sbjct 3704 TTGTCCAATCTTTCATATCATGGACAAGATCTAATTCTTCTGCAGTCCAAAAACTAGCTT 3763 Query 17493 CTGCCTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAATACAACATATCTAT 17552 | || || |||||||| | ||| | ||| ||| ||| || || || | ||| ||| || Sbjct 3764 CAGCTTTCTTATACATTTCCCACACATCTGTGTGTTGAATAGGAAAAAGCACAAATCGAT 3823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517511099116440