Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq2584 248 9e-61 >seq2584 Length=5567 Score = 248 bits (274), Expect = 9e-61 Identities = 412/589 (70%), Gaps = 12/589 (2%) Strand=Plus/Plus Query 16194 ACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAA 16253 |||| || || || ||||| ||||| || || || || | ||||||||||| |||| Sbjct 3227 ACATGAGGCAGGCAAAGTCACAATGAAGACCCTCATCACGAGAAATAAGTTCGTTCGAAA 3286 Query 16254 AAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGC-AAATGACCCC 16312 | |||| || ||||| || |||||||| | ||| || |||| ||| |||||| || Sbjct 3287 AGCTTAAACCAGGCATCAAACCACGTTTCTTGAGCCAAAAGATCG-AGCAAAATGATCCT 3345 Query 16313 GAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCT 16372 |||||||| ||||| ||||||| ||||| || | | ||||| || |||| |||| | Sbjct 3346 GAAAAGAAAATACCTTCAACAGCAGCAAAGGCTACAATACGTTCTGCATACGCAGCAATT 3405 Query 16373 TT---ATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTT 16429 || ||| | |||||| | |||||| ||||| ||| || |||| ||||| Sbjct 3406 TTGCCATTGC---ACCATTTAAGAGCCCATTTAGCTTTACGTTGTACACAAGGAATCGTA 3462 Query 16430 TCTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGT 16489 || || ||| | || | ||||||||| ||| || | ||||| |||||||| || Sbjct 3463 TCAATAGCCCTCAAAACACGATCTTTTTCCACAATGTCCTTGATATAAGTATCAATGAGC 3522 Query 16490 AAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGA 16549 || || | |||||| || || || || || || || ||||||||||| || |||| | Sbjct 3523 AACGAATAAACTTCTGAATGAATATTTTCGATAGCAATTTGAAATCCATAAAAACATCTA 3582 Query 16550 GCCTCCGCTATTTGTACTTCCACGTAAAA--TCGTTCCGCCAGGTTCTCATTCACGATAC 16607 || || | || ||||||||| | |||| || | |||| || ||||| || |||| Sbjct 3583 GCTTCAGGTACTTGTACTTCATTGGAAAAATTCAT--GGCCAAATTTTCATTTACAATAC 3640 Query 16608 CGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAA 16667 | || ||| |||||||| ||||||| || |||| || || ||| | |||| Sbjct 3641 CATCCGATGCTGCAAAAAATGCCAATACATGGGTAATAAAGAATCGTTCATTGTCCGTAA 3700 Query 16668 GAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAG 16727 | | ||||||||| | ||| | | | ||| | |||||||| |||||||| |||| Sbjct 3701 GTTTTGTCCAATCTTTCATATCATGGACAAGATCTAATTCTTCTGCAGTCCAAAAACTAG 3760 Query 16728 CCACTGCCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAA 16776 | | || || |||||||||| ||| | ||| ||| ||| || ||||| Sbjct 3761 CTTCAGCTTTCTTATACATTTCCCACACATCTGTGTGTTGAATAGGAAA 3809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511380307837560