Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq349 102 6e-17 >seq349 Length=38488 Score = 102 bits (112), Expect = 6e-17 Identities = 142/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 101642 GTTGGAAACGGTCTAGGAGTTCGCGTCAACTGCATTTTAAGAGCATCAATGTGATCTACA 101701 |||||||| || | ||| ||||| | | ||| || |||| |||||||| | | | Sbjct 16575 GTTGGAAATGGACGAGGTGTTCGAGAAAGCTGTTCCTTGAGAGGTTCAATGTGGTTAAGA 16634 Query 101702 TAGATGTGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGA 101761 || | || ||||| || || ||||||||| ||||||| | | | || ||| Sbjct 16635 TACACATGGGCATCCCCAATGACATGGATAAAATCTCCAGCTTTCAAACCACACACTTGA 16694 Query 101762 GCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATA 101821 |||||||||| || | ||||| |||||| |||||||| || || || || | ||||| Sbjct 16695 GCAATCATGCGCGTGAGAAGAGCATAGCTTGCAATGTTGAAAGGTACACCAAGACCCATG 16754 Query 101822 TCAGCTGATCTTTGATACA 101840 ||||| |||||||| |||| Sbjct 16755 TCAGCAGATCTTTGGTACA 16773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361227720139583