Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq2584 259 6e-64 seq224 237 2e-57 >seq2584 Length=5567 Score = 259 bits (286), Expect = 6e-64 Identities = 438/627 (70%), Gaps = 13/627 (2%) Strand=Plus/Plus Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186 |||| | || || || || || || |||||||| || | | ||| | |||||| |||| Sbjct 3227 ACATGAGGCAGGCAAAGTCACAATGAAGACCCTCATCACGAGAAATAAGTTCGTTCGAAA 3286 Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAG 24246 | | | || ||||| | ||||| || || |||||||| || || ||||||||| | Sbjct 3287 AGCTTAAACCAGGCATCAAACCACGTTTCTTGAGCCAAAAGATCGAGCAAAATGATCCTG 3346 Query 24247 AAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGT 24306 |||||||||| ||||| || || |||||||| | || | |||| |||| | || | | Sbjct 3347 AAAAGAAAATACCTTCAACAGCAGCAAAGGCTACAATACGTTCTGCATACGCAGCAATTT 3406 Query 24307 ---CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 24363 ||| ||| || ||||||| | || || || ||||||||| || || || | Sbjct 3407 TGCCATTGCACCATTTAAGAGCCCATTTAGCTTTACGTTGTACACAAGGAATCGTATCAA 3466 Query 24364 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCA--AAAG 24421 |||| | || | | | |||||| | | || || | ||| |||||||| | || | Sbjct 3467 TAGCCCTCAAAACACGATCTTTTTCCACAATGTCCTTGATATAAGTATCAATGAGCAACG 3526 Query 24422 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGC 24481 | || || ||| |||||||| ||||| || || ||||||||||| || ||||||||||| Sbjct 3527 AATAAAC--TTCTGAATGAATATTTTCGATAGCAATTTGAAATCCATAAAAACATCTAGC 3584 Query 24482 CTC-GGTAATCTGTACTTCTATACAAAATCGTTCT--GCTAAATTTTCATTCACTATTCC 24538 || |||| | |||||||| | |||| ||| || ||||||||||| || || || Sbjct 3585 TTCAGGTACT-TGTACTTCATTGGAAAAA--TTCATGGCCAAATTTTCATTTACAATACC 3641 Query 24539 GTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAG 24598 || ||||||||||| ||||||||||| | ||||| || ||| | || || Sbjct 3642 ATCCGATGCTGCAAAAAATGCCAATACATGGGTAATAAAGAATCGTTCATTGTCCGTAAG 3701 Query 24599 TTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGC 24658 ||| ||||||| || ||||| | | ||| | |||||| | |||||||| || Sbjct 3702 TTTTGTCCAATCTTTCATATCATGGACAAGATCTAATTCTTCTGCAGTCCAAAAACTAGC 3761 Query 24659 CTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCT 24718 || || || |||||||| | ||| | || | |||||| ||||||| ||||||| Sbjct 3762 TTCAGCTTTCTTATACATTTCCCACACATCTGTGTGTTGAATAGGAAAAAGCACAAATCG 3821 Query 24719 ATTTGGATTTTTTGCAAGGATTGGTTC 24745 |||||| |||| | | || |||||| Sbjct 3822 ATTTGGGTTTTCCGATAAGAATGGTTC 3848 >seq224 Length=84125 Score = 237 bits (262), Expect = 2e-57 Identities = 1179/1846 (64%), Gaps = 65/1846 (4%) Strand=Plus/Minus Query 52840 ACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGT 52899 |||||| |||||||| || || || || || | |||| ||||||||||||| || Sbjct 28856 ACGTAGGTAGTACATGCCTGTCTTAAGTCCACGTTTCCAAGCGTAAAAATGCATCGAGGT 28797 Query 52900 TAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAA 52959 |||||| ||| ||||| || ||||||| |||||| ||||| |||| ||| || Sbjct 28796 GAGTTTGCTCACACTTGGATCGGCAATATGGACATTCATCGATTGCGATTGACAGATAAA 28737 Query 52960 GGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTT 53019 || || | || ||||| | | || || ||||||| || |||||| | || || Sbjct 28736 TGCACCACGATCAGCAGCAAGATCTAAAATAATCTTTTGCTTAACTTCCCATACTGTCTT 28677 Query 53020 ATAAACTCGCTTAATATCTTCTGGAAGGTTTG-TA--TTCTGAATAGATCCACCATCTAC 53076 |||| || ||| || ||||| || || || |||| | |||| ||| Sbjct 28676 GTAAATGTCTTTGATACGTTTTGGAATACTTAATACGTTTTGAACACTACCACGATCATG 28617 Query 53077 CATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAA---CTCTAAG 53133 | ||| ||| | ||| ||||||| | | | | || || || | | Sbjct 28616 TAAAATTTGATTACGTACTTCAGCATTCCAAAGA---CCCAAAGATATAAGTTCTTTCAT 28560 Query 53134 GAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACT 53193 | || || || | | |||||| |||| | || | |||| ||| || || Sbjct 28559 CAAATATTTGTTGACAATTGTAAATTCACCAGCAAGAACACGACGAGAGTACATGTTGGA 28500 Query 53194 GGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCAT 53253 ||| | ||||| | || ||||| || || | |||||| ||||| || || || ||||| Sbjct 28499 TGTAAATGGTTCAATTGATTCATTGTTGCCAAGAATTTGTGCAGTAGAAGCTGTTGGCAT 28440 Query 53254 AGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGT 53311 || || | ||| | | ||| | || ||| ||| | | | || | |||| || | Sbjct 28439 TGGGGCAAGCAAAAGAGAATTGCGAATACC--ATGCTTGGCCACTTGAGCTTTGAGTGTA 28382 Query 53312 TCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTA 53371 |||| | |||||||| | || ||| ||| | ||||| || Sbjct 28381 GCCCAGTCCCAAAGATTTGTTGGAGAAACACCCCACATATCATATTGGAAGATACCTTTG 28322 Query 53372 CTGGCGTACGATCCTACATATGTATCGTATGGTCC---TTCCTTCTCAGCTAGTTCAC-- 53426 || | || ||| |||| || |||||||| || ||| || || | | || Sbjct 28321 CTTACAGGAGAGCCTGCATACGTTTCGTATGGACCAAATTCTTTGGCAATT--TCCATGG 28264 Query 53427 AACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGAT-CTTGT 53485 | | || ||||| |||| || ||||| ||||| | |||| || | |||| Sbjct 28263 ATGTTTCCATGGATGCATGGTAA---ATAGTTTCAAAGATTTGAATATTGAGTTTCTTG- 28208 Query 53486 GCTTCCAGGCTAT-CAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAAC 53544 ||||| || || |||| |||||| | ||||||||| || || || | |||||||| Sbjct 28207 GCTTC-AGCAGATTCAAAAGGATAACCCATGAGAATAAAGGCATCAGCAAGCCCTTGAAC 28149 Query 53545 ACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATA 53604 ||||||||| ||||| | ||| | | |||| || ||||||| |||||| || || Sbjct 28148 ACCAATACCAATAGGACGATGACGCATATTGCTTCGTTTAGCTTCTTCAATAGGGTAGTA 28089 Query 53605 ATTAATATCTATAATTTTATTGAGGTTTC---TGACAATTACTTTGACCACATCCTTCAG 53661 || || || || | ||| || | || | | |||||| ||| | | | || Sbjct 28088 GTTGATTTCAATCACTTTGTTTAAATTGCGAGTAACAATT---TTGGTGATTTTATGCAA 28032 Query 53662 TTTGAGAAAATCAAATTGTCCATCTATTACAAACATGTTCAATG--CAATAGATGCCAGA 53719 ||| ||| |||||| ||||| | ||||| | || || | |||| ||||||| | Sbjct 28031 ATTGGTAAAGTCAAATACACCATCATTGACAAA--TTTTGAAAGAGCAATCGATGCCAAA 27974 Query 53720 TTACAAACGGCTACCTCAT--TAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTAC 53777 || || || || || |||| | || | | ||||| || | ||| ||| | |||| Sbjct 27973 TTGCACACAGCCACTTCATCTTTGCTT--GTATATTCGATAACTTCACAGCACAAGTTAC 27916 Query 53778 TACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG---TTACACGCATCCTTAT 53834 | | || || || ||||| |||||||| || | |||| || || ||||| || | Sbjct 27915 TCGATTTAATAGTACCTAAGTTTTGTTGGTT---CGATTTGGAATTGCAAGCATCTTTGT 27859 Query 53835 AAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACAC 53894 | | || |||| ||||||||||| || || || || | ||| || ||| | Sbjct 27858 ACAACATATATGGTGTACCAGTTTCGATTTGAGAATCGAGAATGGCAAACCATAATTGCT 27799 Query 53895 GAGCCTTTATTATAGATTTGTATCTCTT--TTCTCTTTCGTATAGTGTATACAATCGTTC 53952 ||||||| ||| | ||| | | | ||| ||| || || ||||| ||| Sbjct 27798 GAGCCTTGATTGTC--TTTCGAGCACGACCTTCAGATTCAAATTTGGTGTACAAAGCTTC 27741 Query 53953 AAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC-- 54010 ||| || | ||||| || | ||| |||| | ||||| || || | || ||| Sbjct 27740 AAATTCCTTGCCCCAGCAATCTTGCAAGCCAGAAGCTTCATTTGGGCAAA--AAAGACTC 27683 Query 54011 CACTCTCCGTCATCCTTC-ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 54069 || || || | | |||| || || |||||||| | |||||| ||||| | || ||| Sbjct 27682 CAATCACCATT-TGCTTCGACACGCTTCATAAACAAATCAGGGATCCACAAGGCATAAAA 27624 Query 54070 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 54129 ||||| | | | ||| || || || ||| || || ||||| | ||| | | Sbjct 27623 GAGATCACGAGCACGGTGTAGTTCATTGCCATGATTTTTCTTGAGATCCAAAAACTCAAA 27564 Query 54130 AATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACT--CCAGGCCGTTTGTTTCCT 54187 |||||||| |||||| ||||| | || |||| || ||| || || || || Sbjct 27563 AATATCAGCATGCCATGGTTCAAGATACATGG-CA-AACGAACCCTTACGCTTACCACCA 27506 Query 54188 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 54247 || || || | || | |||||| | ||| | |||| | ||| ||||| ||||| || Sbjct 27505 CCTTGGTCAACATAGCGAGCGGTATCATTGAATACTCGAAGCATGGGAATGATACCGTTC 27446 Query 54248 GATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGA 54307 |||| |||||||| || ||||| || | | |||||||| || | Sbjct 27445 GATGAGCCATTGGTACCACGAATATAACTATTTGTTGAGCGAATATTGTGGATATTCACG 27386 Query 54308 CCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 54367 || || || || ||| ||| || || | || ||| |||| || |||||||| || || Sbjct 27385 CCGATACCACCAGCCCATTTGGAAATACAAGCACATTGTTTCAAAGTATCATAAATACCT 27326 Query 54368 TCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 54427 || || ||| ||| ||||| | ||||| || |||| ||| |||| ||| Sbjct 27325 TCAATCGAATCGTCCTTCATGGCCAAAAGAAAGCAAGACGACAATTGTGGACGTGGAGTA 27266 Query 54428 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG-TA 54486 || ||||| || | ||||| | ||| || || || | ||| | | | ||| || Sbjct 27265 CCAGCATTGAAAAGAGTAGGTGTAGCATGGGTGAAGAACATTTGACTCA-TGTATTCATA 27207 Query 54487 CGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 54546 || || | |||| | ||||| || |||||| || || || |||||||| | ||| Sbjct 27206 AGTGTCCAAAGCTCCAGCAATATCTTCTTTATGAATACCAACAGCAACACGCATGATCAT 27147 Query 54547 GTGCTGAGGTCTTTCAACGATCTTGTTG-TTTATTTTCAGCAAGTAGGATTTTTCCAAAG 54605 ||||||||||| |||| | | ||| | |||| || ||||| ||| |||||||||| Sbjct 27146 GTGCTGAGGTCGTTCA-CAAACTTTTCCATTTACTTGAAGCAAATAGCTCTTTTCCAAAG 27088 Query 54606 TTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 ||||||| ||||| || | ||| ||| || || || ||||||| Sbjct 27087 TTTTAAATCCAAAGTAATCATATTCAAAATCACGATCAGAAATAAT 27042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593682021033840