Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq419 105 7e-18 seq580 102 8e-17 seq2092 93.3 4e-14 >seq419 Length=23932 Score = 105 bits (116), Expect = 7e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || | ||||| || ||||| || |||| |||||| | | Sbjct 23514 ATGCAAATCTTCGTGAAGACATTGACGGGTAAGACCATTACTCTCGATGTCGAACCATCG 23573 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | |||| ||||| |||| |||| ||||| || ||||| || | || || Sbjct 23574 GATTCCATTGACAACG-TCAAGCAAAAGATTCAAGACAAGGAAGGCATTCCTCCAGATCA 23632 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| ||||| | || || ||||| || || || | |||||||| | |||||||| Sbjct 23633 ACAACGCCTCATTTTTGCTGGTAAACAACTTGAAGATGGCCGCACCCTTAGTGACTACAA 23692 Query 40869 CATCCAGAAGGA 40880 |||||| ||||| Sbjct 23693 CATCCAAAAGGA 23704 Score = 105 bits (116), Expect = 7e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || | ||||| |||||||| ||| |||| |||||| | | Sbjct 23742 ATGCAAATCTTTGTCAAGACATTGACGGGTAAAACCATTACCCTCGATGTCGAACCTTCG 23801 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | ||||| |||| || | ||||| || ||||| || | || || Sbjct 23802 GATTCTATTGACAATGTCAAGCAAAAGATCCAAGACAAGGAAGGCATTCCACCTGATCAA 23861 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| ||||||| || ||||| || || || || | ||||| |||| |||||||||| Sbjct 23862 CAACGTCTCATCTTTGCCGGCAAGCAACTCGAAGATGGCCGCACTCTCAGCGACTACAAC 23921 Query 40870 ATCCAGAAGGA 40880 ||||| ||||| Sbjct 23922 ATCCAAAAGGA 23932 Score = 91.5 bits (100), Expect = 2e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || ||||| ||| | || || || || ||||| | ||||||||| | | Sbjct 23286 ATGCAAATTTTTGTAAAGACGTTGACCGGTAAGACGATCACACTTGACGTCGAACCTTCG 23345 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 ||| | | | | | || |||| || | ||||| || ||||| || | || || Sbjct 23346 GACTCCATTGATAATGTTAAACAAAAGATCCAAGACAAGGAAGGCATTCCTCCAGATCAA 23405 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| ||||| | || || ||||| || || || | || || | | |||||||||| Sbjct 23406 CAACGCCTCATTTTTGCCGGTAAACAACTCGAAGATGGCCGTACTTTAAGCGACTACAAC 23465 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||| ||||| | || ||||| | || ||||| Sbjct 23466 ATCCAAAAGGAATCTACATTGCATTTGGTCTTGCG 23500 >seq580 Length=37562 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| |||||||| ||| | || ||||| || || || | || |||||| | | Sbjct 8493 ATGCAAATTTTCGTAAAGACGTTGACCGGCAAGACAATTACATTGGATGTCGAACCTTCG 8434 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | || |||| | || |||| || | || || || |||||||| | ||||| Sbjct 8433 GACTCGATTGATAACG-TAAAACAAAAGATCCAAGATAAGGAAGGCATCCCACCAGACCA 8375 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||||| | || | || |||||||| || || || | ||||| |||| || ||||| Sbjct 8374 GCAACGATTGATTTTTGCTGGCAAACAACTCGAAGATGGCCGCACTCTCAGTGATTACAA 8315 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||| || ||||| |||| || ||| | || | || ||| | || || Sbjct 8314 CATTCAAAAGGAATCCACACTTCATTTGGTCCTACGTTTGCGTGGTGG 8267 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || ||||| | ||||| |||||||| ||| | || || ||| | || Sbjct 8037 ATGCAAATCTTTGTCAAAACTTTGACGGGAAAAACCATTACCTTGGATGTTGAACCATCC 7978 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | || || | ||||| |||| || | ||||| || |||||||| |||| || Sbjct 7977 GACTCGATTGATAATG-TCAAGCAAAAGATCCAAGACAAGGAAGGCATCCCTCCGGATCA 7919 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| | || | ||| || ||||| || || |||| || || | | |||||||| Sbjct 7918 ACAACGTTTGATTTTCGCTGGTAAACAACTTGAAGACGGTCGTACATTAAGTGACTACAA 7859 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||| || ||||| | || || || | || ||||| Sbjct 7858 CATTCAAAAGGAATCTACTCTCCACTTGGTATTGCG 7823 Score = 91.5 bits (100), Expect = 2e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || | || || || || || || | ||||| ||| | | Sbjct 8265 ATGCAAATTTTCGTCAAGACATTGACTGGAAAGACTATTACACTTGACGTGGAACCTTCA 8206 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 ||| | | | | || |||| |||| |||||||| |||||||| | || || Sbjct 8205 GACTCAATTGATAATGTGAAACAAAAGATTCAAGACAAAGAAGGCATCCCTCCAGATCAA 8146 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| | || | || |||||||| || || || | || | |||| ||||||||| Sbjct 8145 CAACGTTTAATTTTTGCTGGCAAACAACTCGAAGATGGTCGTTCTCTCAGTGACTACAAC 8086 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTT 40907 || |||||||| | || || |||||||| ||||| || Sbjct 8085 ATTCAGAAGGAATCTACTCTACATCTAGTCTTGCGTTT 8048 >seq2092 Length=13256 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 40684 CGAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAA 40743 |||| ||||| || |||||||| || | ||||| || |||||||| | || |||||| Sbjct 11689 CGAACGATGCAGATCTTCGTAAAGACCTTGACGGGTAAGACCATCACATTGGATGTCGAA 11748 Query 40744 GCCACCGACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGC 40802 | | || | || || | ||||| ||||||||| ||||| || ||||| || | Sbjct 11749 CCTTCGGATTCGATTGATAATG-TCAAGCAAAAAATTCAAGACAAGGAAGGCATTCCTCC 11807 Query 40803 GGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGA 40862 || || ||||| | |||| || ||||| || || || || | ||||| | | ||| Sbjct 11808 AGATCAACAACGTTTGATCTTTGCCGGCAAGCAACTCGAAGATGGTCGCACTTTGAGCGA 11867 Query 40863 CTACAACATCCAGAAGGA 40880 ||||||||||| ||||| Sbjct 11868 TTACAACATCCAAAAGGA 11885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515184854200080