Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq419 132 7e-26 seq580 131 3e-25 seq5008 120 5e-22 seq2092 107 3e-18 seq4831 96.9 5e-15 seq349 84.2 3e-11 >seq419 Length=23932 Score = 132 bits (146), Expect = 7e-26 Identities = 169/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595 || |||||||| ||| | |||||||| || || || || || || | || |||| || Sbjct 22827 ACCATGCAAATCTTTGTCAAGACACTCACGGGGAAGACAATCACGCTCGATGTTGAGCCA 22886 Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 || | ||| || | || || || ||||||||||| ||||| || || || ||| Sbjct 22887 TCGGACTCCATTGACAACGTCAAGCAAAAGATTCAAGATAAGGAAGGCATTCCTCCAGAT 22946 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 |||||| | ||||| ||||| || || ||| | || ||| |||| || | ||||| Sbjct 22947 CAACAACGTCTTATCTTTGCTGGCAAGCAACTCGAAGATGGTCGTACCCTGAGCGATTAC 23006 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| ||||| ||||| || |||||||||||| | ||||| || ||||| || Sbjct 23007 AATATCCAAAAGGAATCCACATTGCATTTGGTTCTTCGTTTGCGTGGTGGCAT 23059 Score = 127 bits (140), Expect = 3e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| ||||||| | || || || || || || | || | ||| | Sbjct 23286 ATGCAAATTTTTGTAAAGACGTTGACCGGTAAGACGATCACACTTGACGTCGAACCTTCG 23345 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || | ||| |||| | ||||| || || ||||| || ||||| || || || |||||| Sbjct 23346 GACTCCATTGATAATGTTAAACAAAAGATCCAAGACAAGGAAGGCATTCCTCCAGATCAA 23405 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | || |||||||| || |||||| | || ||| | || || ||| || || || Sbjct 23406 CAACGCCTCATTTTTGCCGGTAAACAACTCGAAGATGGCCGTACTTTAAGCGACTACAAC 23465 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| ||||| || ||||||||||| || ||| | || |||||||| Sbjct 23466 ATCCAAAAGGAATCTACATTGCATTTGGTCTTGCGTCTTCGTGGTGGTAT 23515 Score = 114 bits (126), Expect = 2e-20 Identities = 168/238 (71%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| | || || || || || || | || | ||| || Sbjct 23058 ATGCAAATCTTTGTTAAGACTTTGACCGGTAAGACGATCACACTTGACGTCGAACCATCG 23117 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || | || || | ||||| || ||||||||||| ||||| || || || |||||| Sbjct 23118 GACTCCATCGACAACGTGAAACAAAAGATTCAAGATAAGGAAGGCATTCCTCCAGATCAA 23177 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | ||||| ||||| || ||||| | || || | ||||| || || || ||| Sbjct 23178 CAACGTCTTATCTTTGCTGGTAAACAGCTCGAAGACGGACGAACTTTGAGCGACTACAAT 23237 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 || ||||| ||||| || ||||||||||| | ||||| || ||||| || ||| || Sbjct 23238 ATCCAAAAGGAATCTACATTGCATTTGGTCCTCCGTTTGCGTGGTGGCATGCAAATTT 23295 >seq580 Length=37562 Score = 131 bits (144), Expect = 3e-25 Identities = 174/239 (73%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | |||||||| || || || || || || | || | ||| | Sbjct 8721 ATGCAAATCTTTGTCAAGACACTCACCGGAAAGACAATTACGTTGGACGTGGAACCTTCG 8662 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || | ||| ||| | || || ||||||||||| || |||||||| || || |||||| Sbjct 8661 GACTCGATTGATAACGTCAAGCAAAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAA 8602 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACA-TTAGAAGATTATAA 124717 ||| | | || ||||| || |||||||| || ||| | || || |||| || || || Sbjct 8601 CAACGTTTGATCTTTGCTGGCAAACAATTGGAAGATGGACGTACTCTTAGT-GACTACAA 8543 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 ||| ||||| ||||| || ||||| ||||| || ||||||||||| || || ||| || Sbjct 8542 TATCCAAAAGGAATCGACCTTGCACTTGGTGTTGCGTTTACGAGGCGGGATGCAAATTT 8484 >seq5008 Length=14815 Score = 120 bits (132), Expect = 5e-22 Identities = 175/246 (71%), Gaps = 1/246 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | |||||| | |||||||| || || || | || | ||| | Sbjct 6222 ATGCAGATCTTCGTCAAGACATTGACAGGCAAGACCATCACGTTGGATGTCGAACCTTCG 6281 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||| | ||| |||| | || || || |||||||| || ||||| || || || |||||| Sbjct 6282 GATTCGATTGATAATGTCAAGCAAAAGATTCAAGACAAGGAAGGCATTCCTCCAGATCAA 6341 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | || |||||||| |||||| | || ||| | || || || ||||| || Sbjct 6342 CAACGTTTGATCTTTGCAGGCAAACAACTTGAAGATGGACGTACTTTGAGCGATTACAAC 6401 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATTCA 124778 || ||||||||||| ||| | |||||||| | ||| | || |||||| ||| || | Sbjct 6402 ATCCAAAAAGAATCTACTCTTCATTTGGTCCTTCGTCTTCGTGGTGGTGGTAAGAA-GCG 6460 Query 124779 TAAAAA 124784 |||||| Sbjct 6461 TAAAAA 6466 >seq2092 Length=13256 Score = 107 bits (118), Expect = 3e-18 Identities = 167/239 (70%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595 || ||||| || || ||||||| | || || || || || || | || | ||| | Sbjct 11692 ACGATGCAGATCTTCGTAAAGACCTTGACGGGTAAGACCATCACATTGGATGTCGAACCT 11751 Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 ||| | ||| |||| | || || ||||||||||| || ||||| || || || ||| Sbjct 11752 TCGGATTCGATTGATAATGTCAAGCAAAAAATTCAAGACAAGGAAGGCATTCCTCCAGAT 11811 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 |||||| | | || ||||| || || ||| | || ||| |||| || || ||||| Sbjct 11812 CAACAACGTTTGATCTTTGCCGGCAAGCAACTCGAAGATGGTCGCACTTTGAGCGATTAC 11871 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAA 124774 || || ||||| ||||| |||||||| ||||| | || | || |||||| ||| || Sbjct 11872 AACATCCAAAAGGAATCGACTTTGCACTTGGTCCTTCGCCTTCGTGGTGGTGGTAAGAA 11930 >seq4831 Length=17254 Score = 96.9 bits (106), Expect = 5e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 124626 ATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAA 124685 || ||||| |||||||| || || ||||||||| | || || ||||| || |||||| Sbjct 11513 ATCCAAGAAAAAGAAGGCATTCCTCCTGATCAAATGCGACTCATATTTGCTGGCAAACAA 11454 Query 124686 TTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTG 124745 |||| ||| | |||||||| |||||||||||||||| ||||||||| | || | Sbjct 11453 CTAGAAGATGGACGAACATTGCGGGATTATAATATTCAAAGAGAATCAACGCTACACCTT 11394 Query 124746 GTTTTACGTTTACGAGGT 124763 ||| | || |||| ||| Sbjct 11393 GTTCTTCGGCTACGTGGT 11376 >seq349 Length=38488 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 205651 TCAGGtttattttttattttatttatAATATGTGTTAATTGATCAAATCCTTGATTTGTA 205710 |||||||| ||||| || || || || | | | | |||||||| ||||| || Sbjct 16973 TCAGGTTTGTTTTTAATCTTGTTGATGACGTCAGCAAGTTGATCAACACCTTGTCCAGTG 17032 Query 205711 TAATTTGTATCCATATCAATATATTTAGCACCAAAATGACGCCATTGAAAACCATAAACT 205770 |||| || | |||||||| |||||||| || ||||||||||||||||| ||||| || Sbjct 17033 TAATCAGTGTGCATATCAACGTATTTAGCTCCGAAATGACGCCATTGAAAGCCATACACG 17092 Query 205771 GGACCTAAATCACC 205784 || || | ||| || Sbjct 17093 GGCCCAAGATCTCC 17106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755405639414400