Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq419 116 4e-21 seq580 105 8e-18 seq2861 91.5 2e-13 seq1188 87.8 2e-12 seq2232 84.2 3e-11 >seq419 Length=23932 Score = 116 bits (128), Expect = 4e-21 Identities = 160/221 (72%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 42966 AAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGC 43025 ||||| | ||||||||||||||| |||||||| ||||||||||| ||| || || Sbjct 23047 AAACGAAGAACCAAATGCAATGTGGATTCCTTTTGGATATTGTAATCGCTCAGGGTACGA 22988 Query 43026 TCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCC 43085 | || || || ||||| ||||| || || || || || || || | || | || ||| Sbjct 22987 CCATCTTCGAGTTGCTTGCCAGCAAAGATAAGACGTTGTTGATCTGGAGGAATGCCTTCC 22928 Query 43086 TTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGAT---TCCACATCGACC 43142 || || || ||||| |||| ||| | || || | |||| || ||||||| | Sbjct 22927 TTATCTTGAATCTTTTGCTTGA-CGTTGTCA--ATGGAGTCCGATGGCTCAACATCGAGC 22871 Query 43143 GTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||| || || ||||| || ||||| |||||||||||||| Sbjct 22870 GTGATTGTCTTCCCCGTGAGTGTCTTGACAAAGATTTGCAT 22830 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 42966 AAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGC 43025 ||||| | |||||||||||||| |||||||| |||||||| || || ||| || Sbjct 23275 AAACGGAGGACCAAATGCAATGTAGATTCCTTTTGGATATTGTAGTCGCTCAAAGTTCGT 23216 Query 43026 TCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCC 43085 |||| || ||||| |||||||| || || || || || || || | || | || ||| Sbjct 23215 CCGTCTTCGAGCTGTTTACCAGCAAAGATAAGACGTTGTTGATCTGGAGGAATGCCTTCC 23156 Query 43086 TTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGT 43144 || || || |||||||| | ||| | | | | ||| | ||| || || | || Sbjct 23155 TTATCTTGAATCTTTTGTTTCA-CGTTGTCGATGGAGTCCGATGGTTCGACGTCAAGTGT 23097 Query 43145 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || || || || | ||||| |||||||||||||| Sbjct 23096 GATCGTCTTACCGGTCAAAGTCTTAACAAAGATTTGCAT 23058 Score = 93.3 bits (102), Expect = 5e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 |||||| |||||||||||||| |||||||| || ||||| || | ||| || | Sbjct 23501 ACGCAAGACCAAATGCAATGTAGATTCCTTTTGGATGTTGTAGTCGCTTAAAGTACGGCC 23442 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || || || ||||| || || ||||| || || || || | || | || ||||| Sbjct 23441 ATCTTCGAGTTGTTTACCGGCAAAAATGAGGCGTTGTTGATCTGGAGGAATGCCTTCCTT 23382 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 ||| ||| |||||||| | | | | | ||| | ||| || || | ||||| Sbjct 23381 GTCTTGGATCTTTTGTTTAACATTATCAATGGAGTCCGAAGGTTCGACGTCAAGTGTGAT 23322 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || || | |||||||||||| |||||||| Sbjct 23321 CGTCTTACCGGTCAACGTCTTTACAAAAATTTGCAT 23286 Score = 84.2 bits (92), Expect = 3e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 |||||||| || ||||| || ||||| || | || || || ||||| || || || Sbjct 23932 TCCTTTTGGATGTTGTAGTCGCTGAGAGTGCGGCCATCTTCGAGTTGCTTGCCGGCAAAG 23873 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 ||||| || || || || | || | || |||||||| ||| ||||| |||| | Sbjct 23872 ATGAGACGTTGTTGATCAGGTGGAATGCCTTCCTTGTCTTGGATCTTTTGCTTGACATTG 23813 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | | || | ||| ||||||| || |||||||| ||||| | ||||| ||| Sbjct 23812 TCAATAGAATCCGAAGGTTCGACATCGAGGGTAATGGTTTTACCCGTCAATGTCTTGACA 23753 Query 43173 AAGATTTGCAT 43183 ||||||||||| Sbjct 23752 AAGATTTGCAT 23742 >seq580 Length=37562 Score = 105 bits (116), Expect = 8e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 42966 AAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGC 43025 ||||| | |||||||| | |||| ||||||||||| ||||||||| ||||| || Sbjct 8276 AAACGTAGGACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCACTGAGAGTGCGG 8335 Query 43026 TCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCC 43085 | || || || || || ||||| || || | ||| |||||||| | || | || ||| Sbjct 8336 CCATCTTCGAGTTGTTTGCCAGCAAAAATCAATCGTTGCTGGTCTGGTGGGATGCCTTCC 8395 Query 43086 TTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTG 43145 || || ||| |||||||| | | | | || ||| | ||| ||||| | || Sbjct 8396 TTATCTTGGATCTTTTGTTTTACGTTATCAATCGAGTCCGAAGGTTCGACATCCAATGTA 8455 Query 43146 ATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || ||||| || | ||||||||| || |||||||| Sbjct 8456 ATTGTCTTGCCGGTCAACGTCTTTACGAAAATTTGCAT 8493 Score = 104 bits (114), Expect = 3e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || |||| ||||||||||||||| ||||| || |||||||| |||||||| ||| Sbjct 8495 CCGCCTCGTAAACGCAACACCAAGTGCAAGGTCGATTCCTTTTGGATATTGTAGTCACTA 8554 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || || | || || ||||| || || | || || || || | || Sbjct 8555 AGAGTACGTCCATCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGAGGA 8614 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | | |||||||| |||||||| |||| | | | || ||| | |||||| Sbjct 8615 ATACCTTCCTTGTCTTGAATTTTTTGCTTGACGTTATCAATCGAGTCCGAAGGTTCCACG 8674 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | ||| || || || || || || ||||| |||||||||||||| Sbjct 8675 TCCAACGTAATTGTCTTTCCGGTGAGTGTCTTGACAAAGATTTGCAT 8721 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| | | |||||| ||||| || | || ||||||||||| ||||| ||| Sbjct 7811 CCTCCACGAAGACGCAATACCAAGTGGAGAGTAGATTCCTTTTGAATGTTGTAGTCACTT 7870 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | || || |||| || || || ||||||||||| || | || || || || | || Sbjct 7871 AATGTACGACCGTCTTCAAGTTGTTTACCAGCGAAAATCAAACGTTGTTGATCCGGAGGG 7930 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || |||||||| ||| ||||| |||| | | | || |||| | ||| ||| Sbjct 7931 ATGCCTTCCTTGTCTTGGATCTTTTGCTTGACATTATCAATCGAGTCGGATGGTTCAACA 7990 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | || |||||||| ||||| | || || |||||||||||||| Sbjct 7991 TCCAAGGTAATGGTTTTTCCCGTCAAAGTTTTGACAAAGATTTGCAT 8037 >seq2861 Length=10369 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| |||| |||||||||||||||| ||||| |||||| Sbjct 1811 TCTCCCCGTCCGGGAATTGAACCCGGGTCACCCGCGTGACAGGCGGGTATACTGACCACT 1752 Query 60125 ATACTACCGAGGATT 60139 |||||| |||||||| Sbjct 1751 ATACTAACGAGGATT 1737 >seq1188 Length=10735 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| |||| |||||||||||||||| ||||| |||||| Sbjct 3483 TCTCCCCGTCCGGGAATTGAACCCGGGTCACCCGCGTGACAGGCGGGTATACTAACCACT 3424 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 3423 ATACTAACGAGGA 3411 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| |||| |||||||||||||||| ||||| ||||||| Sbjct 7450 CTCCCCGTCCGGGAATTGAACCCGGGTCACCCGCGTGACAGGCGGGTATACTAACCACTA 7509 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 7510 TACTAACGAGGA 7521 >seq2232 Length=15861 Score = 84.2 bits (92), Expect = 3e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||| ||||| || ||||||||||| |||||||| || ||| || | || || Sbjct 604 ACCAAGTGCAAAGTCGATTCCTTTTGAATGTTGTAATCGCTCAAAGTACGACCATCTTCG 545 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 || ||||| || || || || | || || || || | || | | ||||||||| | Sbjct 544 AGTTGCTTGCCGGCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTGTCCTGG 485 Query 43095 ATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 || ||||| |||| ||| | | | || ||| | || ||||| | ||||||||| || Sbjct 484 ATCTTTTGCTTGA-CGTTGTCAATCGAGTCCGAAGGCTCTACATCCAACGTGATGGTCTT 426 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 ||| || | ||||| || || || ||||| || Sbjct 425 GCCAGTCAATGTCTTGACGAAAATCTGCATATT 393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571779481209240