Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq5008 96.9 2e-15 seq580 89.7 3e-13 seq419 86.0 4e-12 seq2092 84.2 1e-11 >seq5008 Length=14815 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||| || | |||| |||||| || |||||||| ||| || ||| | || Sbjct 6433 AGGACCAAATGAAGAGTAGATTCTTTTTGGATGTTGTAATCGCTCAAAGTACGTCCATCT 6374 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | || |||||||| || || | || || || || || | || |||||||| Sbjct 6373 TCAAGTTGTTTGCCTGCAAAGATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTTGTCT 6314 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||||||||| | || | |||||||| | | |||||| |||| ||||||||| Sbjct 6313 TGAATCTTTTGCTTGACATTATCAATCGAATCCGAAGGTTCGACATCCAACGTGATGGTC 6254 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393 ||||| || | || || || |||||||||||| || Sbjct 6253 TTGCCTGTCAATGTCTTGACGAAGATCTGCATCTCT 6218 >seq580 Length=37562 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | || |||| ||| | |||| ||| || || ||||||||||| Sbjct 7811 CCTCCACGAAGACGCAATACCAAGTGGAGAGTAGATTCCTTTTGAATGTTGTAGTCACTT 7870 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | ||| |||| || | || || || |||||||| | || || || || || Sbjct 7871 AATGTACGACCGTCTTCAAGTTGTTTACCAGCGAAAATCAAACGTTGTTGATCCGGAGGG 7930 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| ||||||||||| | || | ||||| |||| | ||| || Sbjct 7931 ATGCCTTCCTTGTCTTGGATCTTTTGCTTGACATTATCAATCGAGTCGGATGGTTCAACA 7990 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| || |||||||| || || | |||||| |||||||| ||||| Sbjct 7991 TCCAAGGTAATGGTTTTTCCCGTCAAAGTTTTGACAAAGATTTGCAT 8037 >seq419 Length=23932 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/193 (71%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCG--GACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGA 34256 || || || |||||||||||| || || || ||| | || || | |||||||| || | Sbjct 23932 TCCTTTTGGATGTTGTAGTCGCTGAGAG-TG-CGGCCATCTTCGAGTTGCTTGCCGGCAA 23875 Query 34257 AAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGAT 34316 | ||||| || || || || || | || |||||||| ||||||||||| | || Sbjct 23874 AGATGAGACGTTGTTGATCAGGTGGAATGCCTTCCTTGTCTTGGATCTTTTGCTTGACAT 23815 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | | || ||||| | | |||||| || | || |||||||| || || | || || | Sbjct 23814 TGTCAATAGAATCCGAAGGTTCGACATCGAGGGTAATGGTTTTACCCGTCAATGTCTTGA 23755 Query 34377 CAAAGATCTGCAT 34389 ||||||| ||||| Sbjct 23754 CAAAGATTTGCAT 23742 >seq2092 Length=13256 Score = 84.2 bits (92), Expect = 1e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||| ||| ||||| ||| || || |||||||| ||| || || | || Sbjct 11906 AGGACCAAGTGCAAAGTCGATTCCTTTTGGATGTTGTAATCGCTCAAAGTGCGACCATCT 11847 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||||| || || || | || || || || || | || |||||||| Sbjct 11846 TCGAGTTGCTTGCCGGCAAAGATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTTGTCT 11787 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 || |||||||| | || | |||||||| | | |||||| |||| |||||||| Sbjct 11786 TGAATTTTTTGCTTGACATTATCAATCGAATCCGAAGGTTCGACATCCAATGTGATGGTC 11727 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCTCGA 34396 || || || | || || || ||||||||||||| |||| Sbjct 11726 TTACCCGTCAAGGTCTTTACGAAGATCTGCATCGTTCGA 11688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323051001632480