Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq2584 221 1e-52 >seq2584 Length=5567 Score = 221 bits (244), Expect = 1e-52 Identities = 403/585 (69%), Gaps = 4/585 (1%) Strand=Plus/Plus Query 16227 ACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAA 16286 |||| | || ||||| |||||||| | || || || | | || | ||||| |||| Sbjct 3227 ACATGAGGCAGGCAAAGTCACAATGAAGACCCTCATCACGAGAAATAAGTTCGTTCGAAA 3286 Query 16287 ATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAG 16346 | | | ||| ||||| | || ||||| || | |||||| || | | |||||| || | Sbjct 3287 AGCTTAAACCAGGCATCAAACCACGTTTCTTGAGCCAAAAGATCGAGCAAAATGATCCTG 3346 Query 16347 AAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTT-CTAttt 16405 ||||||| ||||||||||| || ||||| || || | || || | |||| | |||| Sbjct 3347 AAAAGAAAATACCTTCAACAGCAGCAAAGGCTACAATACGTTCTGCATACGCAGCAATTT 3406 Query 16406 ttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCT 16465 | | || | |||||| |||||| || ||||| ||| ||||| || | || Sbjct 3407 TGCCATTGCA-CCATTTAAGAGCCCATTTAGCTTTACGTTGTACACAAGGAATCGTATCA 3465 Query 16466 ATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAA 16525 || || | || | | || |||||| | || ||||||||||| || || || Sbjct 3466 ATAGCCCTCAAAACACGATCTTTTTCCACAATGTCCTTGATATAAGTATCAATGAGCAAC 3525 Query 16526 CTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCT 16585 ||| | ||||||||||||||| || || || || ||||| |||||||| ||||||||| Sbjct 3526 GAATAAACTTCTGAATGAATATTTTCGATAGCAATTTGAAATCCATAAAAACATCTAGCT 3585 Query 16586 TCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCG 16645 || | || |||||||||| | |||| | || || ||||| || || || ||||| Sbjct 3586 TCAGGTACTTGTACTTCATTGGAAAAATTCATGGCCAAATTTTCATTTACAATACCATCC 3645 Query 16646 CTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTT 16705 ||||||||||| || | || || ||||||| | ||| || || | ||||||| Sbjct 3646 GATGCTGCAAAAAATGCCAATACATGGGTAATAAAGAATCGTTCATTGTCCGTAAGTTTT 3705 Query 16706 AACCAGTCAGAAAAATCTTTTGATAA-ATCGACCTCTTCTACAGTCCAAAAAGAAGCAAC 16764 ||| || | ||| | || || ||| | |||||| ||||||||||| ||| | Sbjct 3706 GTCCAATCTTTCATATC-ATGGACAAGATCTAATTCTTCTGCAGTCCAAAAACTAGCTTC 3764 Query 16765 AGCCTTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAA 16809 ||| || |||||||||| ||| | ||| || ||||||||| Sbjct 3765 AGCTTTCTTATACATTTCCCACACATCTGTGTGTTGAATAGGAAA 3809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462481167793800