Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq580 113 4e-20 seq2232 111 1e-19 seq2092 98.7 8e-16 seq419 89.7 4e-13 >seq580 Length=37562 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 ||||||||||| || || ||||| |||||||||||||| | | | ||| |||| Sbjct 7826 AATACCAAGTGGAGAGTAGATTCCTTTTGAATGTTGTAGTCACTTAATGTACGACCGTCT 7885 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || |||||||| || ||||| ||||| || ||||| || ||||| | || |||||||| Sbjct 7886 TCAAGTTGTTTACCAGCGAAAATCAAACGTTGTTGATCCGGAGGGATGCCTTCCTTGTCT 7945 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 || |||||||| || | | ||| || || |||| |||||| || Sbjct 7946 TGGATCTTTTGCTTGACATTATCAATCGAGTCGGATGGTTCAACATCCAAGGTAATGGTT 8005 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||||| ||| || |||||||||||||| Sbjct 8006 TTTCCCGTCAAAGTTTTGACAAAGATTTGCAT 8037 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||||||||| || ||||| || || |||||||| | || || | || Sbjct 8510 AACACCAAGTGCAAGGTCGATTCCTTTTGGATATTGTAGTCACTAAGAGTACGTCCATCT 8569 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 |||| |||||| || || || ||||| || ||||| || ||||| | ||| |||||||| Sbjct 8570 TCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTGTCT 8629 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 |||||||||||| || | | |||| | ||||| |||| ||||| ||| Sbjct 8630 TGAATTTTTTGCTTGACGTTATCAATCGAGTCCGAAGGTTCCACGTCCAACGTAATTGTC 8689 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || || || ||||| ||||||||||||||| Sbjct 8690 TTTCCGGTGAGTGTCTTGACAAAGATTTGCATG 8722 Score = 86.0 bits (94), Expect = 5e-12 Identities = 160/235 (68%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| | ||| | || ||||| || || ||| ||||| ||||||||||| || | Sbjct 8267 CCACCACGCAAACGTAGGACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCACTG 8326 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || || |||||||| || || || ||||| || || ||||| || || Sbjct 8327 AGAGTGCGGCCATCTTCGAGTTGTTTGCCAGCAAAAATCAATCGTTGCTGGTCTGGTGGG 8386 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || ||||| || || ||||| || || | | |||| | || || Sbjct 8387 ATGCCTTCCTTATCTTGGATCTTTTGTTTTACGTTATCAATCGAGTCCGAAGGTTCGACA 8446 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCTC 45344 |||| ||||| |||||||| |||| ||||| || || |||||||| ||||| Sbjct 8447 TCCAATGTAATTGTCTTGCCGGTCAACGTCTTTACGAAAATTTGCATCCCGCCTC 8501 >seq2232 Length=15861 Score = 111 bits (122), Expect = 1e-19 Identities = 155/215 (72%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||||| || ||||| ||||||||||| ||| ||| ||| | || || Sbjct 604 ACCAAGTGCAAAGTCGATTCCTTTTGAATGTTGTAATCGCTCAAAGTACGACCATCTTCG 545 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||| || ||||| || ||||| || ||||| || ||||| | ||| ||||||||| Sbjct 544 AGTTGCTTGCCGGCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTGTCCTGG 485 Query 45248 ATTTTTTGCTTAACCGCCGCCACGC-TGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 || |||||||| | || | || | |||| | ||| || |||| || || ||||| Sbjct 484 ATCTTTTGCTTGA-CGTTGTCAATCGAGTCCGAAGGCTCTACATCCAACGTGATGGTCTT 426 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCATGTTGC 45341 ||| |||| ||||| || || || ||||| |||| Sbjct 425 GCCAGTCAATGTCTTGACGAAAATCTGCATATTGC 391 >seq2092 Length=13256 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||||| || ||||| || |||||||| ||| ||| |||| | || || Sbjct 11903 ACCAAGTGCAAAGTCGATTCCTTTTGGATGTTGTAATCGCTCAAAGTGCGACCATCTTCG 11844 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||| || ||||| || ||||| || ||||| || ||||| | || |||||||| | Sbjct 11843 AGTTGCTTGCCGGCAAAGATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTTGTCTTGA 11784 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||||||||| || | | ||| | || || |||| || || ||||| Sbjct 11783 ATTTTTTGCTTGACATTATCAATCGAATCCGAAGGTTCGACATCCAATGTGATGGTCTTA 11724 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||||| ||||| || ||||| ||||| Sbjct 11723 CCCGTCAAGGTCTTTACGAAGATCTGCAT 11695 >seq419 Length=23932 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| | ||| | | ||||| |||| ||| ||||| || || ||||| ||| | Sbjct 23057 GCCACCACGCAAACGAAGAACCAAATGCAATGTGGATTCCTTTTGGATATTGTAATCGCT 22998 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 ||| ||| | || || ||||| || || || || || | || ||||| || ||||| Sbjct 22997 CAGGGTACGACCATCTTCGAGTTGCTTGCCAGCAAAGATAAGACGTTGTTGATCTGGAGG 22938 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | || ||||| || ||| |||||||| || | | | |||| ||| || Sbjct 22937 AATGCCTTCCTTATCTTGAATCTTTTGCTTGACGTTGTCAATGGAGTCCGATGGCTCAAC 22878 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || | || || ||||| ||||| || ||||| ||||||||||||||| Sbjct 22877 ATCGAGCGTGATTGTCTTCCCCGTGAGTGTCTTGACAAAGATTTGCATG 22829 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/216 (69%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCG--TTCAGT-TGGCGATCG 45181 || ||||| |||| || ||||| || |||||||||||| | ||| ||| ||| Sbjct 23497 AAGACCAAATGCAATGTAGATTCCTTTTGGATGTTGTAGTCGCTTAAAGTACGGCCATCT 23438 Query 45182 TCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTG 45241 ||| |||||||| ||||| || || | || ||||| || ||||| | || |||||| Sbjct 23437 TCG---AGTTGTTTACCGGCAAAAATGAGGCGTTGTTGATCTGGAGGAATGCCTTCCTTG 23381 Query 45242 TCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATC 45301 || || ||||| ||||| | | | |||| | || || || | || ||| Sbjct 23380 TCTTGGATCTTTTGTTTAACATTATCAATGGAGTCCGAAGGTTCGACGTCAAGTGTGATC 23321 Query 45302 GTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||||| || |||| ||||| ||||| ||||||||| Sbjct 23320 GTCTTACCGGTCAACGTCTTTACAAAAATTTGCATG 23285 Score = 82.4 bits (90), Expect = 6e-11 Identities = 158/231 (68%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| | ||| | | ||||| |||| || ||||| || || ||||||||| | Sbjct 23285 GCCACCACGCAAACGGAGGACCAAATGCAATGTAGATTCCTTTTGGATATTGTAGTCGCT 23226 Query 45169 CA--GTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGA 45226 || ||| || |||| || || ||||| || || || || | || ||||| || ||| Sbjct 23225 CAAAGTT--CGTCCGTCTTCGAGCTGTTTACCAGCAAAGATAAGACGTTGTTGATCTGGA 23168 Query 45227 GGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCC 45286 || | || ||||| || ||| ||||| || || | | | |||| || Sbjct 23167 GGAATGCCTTCCTTATCTTGAATCTTTTGTTTCACGTTGTCGATGGAGTCCGATGGTTCG 23108 Query 45287 ACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || | || |||||||| || |||| |||||| ||||||||||||||| Sbjct 23107 ACGTCAAGTGTGATCGTCTTACCGGTCAAAGTCTTAACAAAGATTTGCATG 23057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395049521716993