Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq2584 327 1e-84 >seq2584 Length=5567 Score = 327 bits (362), Expect = 1e-84 Identities = 615/885 (69%), Gaps = 28/885 (3%) Strand=Plus/Plus Query 13919 TATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATA 13978 ||||||| || | ||||| || ||||| || || |||| || ||||| | ||||| Sbjct 2950 TATTCACCGACACGCTTTTCGAAAAAGTTGGTCTTTCCTTGAAGAGATATCATGTCCATC 3009 Query 13979 AAATCAAATGGATTTGTTGACATA--AACACTTTATCACAACCTAGTTCTAATAGTAATC 14036 | || |||||||| ||| ||| || ||| | | || || || || | | Sbjct 3010 CAGTCGAATGGATTC-TTGGCATTGTAAAGCTTGGTAGCT-CCAAGGGCTTGGAGAAGGC 3067 Query 14037 TATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTA 14096 ||| ||| ||| ||||| |||| |||| | | | |||||||| || |||| || Sbjct 3068 GATCAGCACAGAATTCAATGTATTCGCACATGAGAGATGAGTTCATACCAATGAGTTCTA 3127 Query 14097 CAGGAATTATATTG-GTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATC 14155 | |||| | ||| | | ||||| ||||| || | ||||| || ||||| || Sbjct 3128 CTGGAAG-AGATTCCGAGACAAATTGCTTTTCAATTGCAACAGCATCCCCAATAATT-TC 3185 Query 14156 GT-AATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAA--TTAAACACGCAAAA 14212 | |||| ||| |||||| || | || || || || | | | || ||||| Sbjct 3186 ATGAATACGTTCGTTAGAA--AGCTTGTTGATGAGCTTGGAATACATGAGGCAGGCAAAG 3243 Query 14213 TCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATC 14272 ||||||||||| |||||||| | | |||||||||||| ||||| |||| || |||||| Sbjct 3244 TCACAATGAAGACCCTCATCACGAGAAATAAGTTCGTTCGAAAAGCTTAAACCAGGCATC 3303 Query 14273 AATCCTCGtttttttAACCAAAATATTGCAGCGAA-TGATCCGGAAAAGAATATTCCCTC 14331 || || ||||| || | |||||| || | ||| || |||||| |||||||| || || || Sbjct 3304 AAACCACGTTTCTTGAGCCAAAAGATCG-AGCAAAATGATCCTGAAAAGAAAATACCTTC 3362 Query 14332 AACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATC--CAT 14389 ||| |||||||| |||| | |||||| || ||| || ||||| | || | ||| Sbjct 3363 AACAGCAGCAAAGGCTACAATACGTTCTGCATACGCAGCAATTTTG--CCATTGCACCAT 3420 Query 14390 TTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAA 14449 || |||||||| || ||| || | | || || || |||||||| | || | | Sbjct 3421 TTAAGAGCCCATTTAGCTTTACGTTGTACACAAGGAATCGTATCAATAGCCCTCAAAACA 3480 Query 14450 TGTTCCTTCTCTTTA--GTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAG 14507 | || || || | || ||||| || | |||||||| || || ||| | ||| | Sbjct 3481 CGATCTTTTTCCACAATGTCCTTGATAT--AAGTATCAATGAGCAACGAATAAACTTCTG 3538 Query 14508 AGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTA 14567 | || || ||||| ||||| || ||||| |||||||||||||||||||| | ||||| Sbjct 3539 AATGAATATTTTCGATAGCAATTTGAAATCCATAAAAACATCTAGCTTCAGGTACTTGTA 3598 Query 14568 CCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAA 14627 | || | |||| | ||||||||||||||| || |||||||| |||||||||| Sbjct 3599 CTTCATTGGAAAAATTCATGGCCAAATTTTCATTTACAATACCATCCGATGCTGCAAAAA 3658 Query 14628 ATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTG---CTGAGTTTTTTCCAATCGG 14684 ||||||||| | |||||||| || | ||||||| | |||||| ||||||| Sbjct 3659 ATGCCAATACATGGGTAATAAAGAATCG---TTCATTGTCCGTAAGTTTTGTCCAATCTT 3715 Query 14685 CTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTAT 14744 | ||| | |||||||| ||| || | |||||||||||||| ||||||| |||| Sbjct 3716 TCATATCATGGACAAGATCTAATTCTTCTGCAGTCCAAAAACTAGCTTCAGCTTTCTTAT 3775 Query 14745 ACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATC 14789 ||||| |||| | ||| | | | |||||||||| ||||||| Sbjct 3776 ACATTTCCCACACATCTGTGTGTTGAATAGGAAAAAGCACAAATC 3820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482313445636440