Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq580 91.5 1e-13 seq5008 89.7 4e-13 >seq580 Length=37562 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||| || || || || || || |||||||| || || || | ||||||||| | Sbjct 8493 ATGCAAATTTTCGTAAAGACGTTGACCGGCAAGACAATTACATTGGATGTCGAACCTTCG 8434 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 ||| | || | || || |||| || | || |||||| | || |||||| Sbjct 8433 GACTCGATTGATAACGTAAAACAAAAGATCCAAGATAAGGAAGGCATCCCACCAGACCAG 8374 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 ||||| || || | ||| ||||||||||| |||||| | ||| | | ||||||| | Sbjct 8373 CAACGATTGATTTTTGCTGGCAAACAACTCGAAGATGGCCGCACTCTCAGTGATTACAAC 8314 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 || || || || |||| |||||||| || |||| ||||| || ||| Sbjct 8313 ATTCAAAAGGAATCCACACTTCATTTGGTCCTACGTTTGCGTGGTGGT 8266 >seq5008 Length=14815 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| || || || || || || ||||| || || || | ||||||||| | Sbjct 6222 ATGCAGATCTTCGTCAAGACATTGACAGGCAAGACCATCACGTTGGATGTCGAACCTTCG 6281 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 || | || | ||| ||| |||| ||| | || |||||| | || || || Sbjct 6282 GATTCGATTGATAATGTCAAGCAAAAGATTCAAGACAAGGAAGGCATTCCTCCAGATCAA 6341 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 |||||||| || | ||| ||||||||||| |||||| ||| ||| |||||||| | Sbjct 6342 CAACGTTTGATCTTTGCAGGCAAACAACTTGAAGATGGACGTACTTTGAGCGATTACAAC 6401 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGT 25040 || || ||||| | || |||||||| || Sbjct 6402 ATCCAAAAAGAATCTACTCTTCATTTGGT 6430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418276811939360