Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq2584 190 2e-43 seq5008 123 2e-23 seq580 116 3e-21 seq2232 111 1e-19 seq2092 107 2e-18 seq419 100 3e-16 seq224 93.3 4e-14 >seq2584 Length=5567 Score = 190 bits (210), Expect = 2e-43 Identities = 567/863 (66%), Gaps = 14/863 (2%) Strand=Plus/Minus Query 57538 GATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAAG 57597 ||||||| | ||||| ||| || | |||| | ||| | ||||| || || || |||| Sbjct 3820 GATTTGTGCTTTTTCCTATTCAACACACAGATGTGTGGGAAATGTATAAGAAAGCTGAAG 3761 Query 57598 CATCGTTTTGGACCGTCGAAGAAGTAGACCT-GTCTAAGGATCTGAGCGATTGGGATTCC 57656 | |||||||| | |||||| |||| || ||| | | || ||| |||||| Sbjct 3760 CTAGTTTTTGGACTGCAGAAGAATTAGATCTTGTCCATG-ATATGAAAGATTGGACAAAA 3702 Query 57657 CTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGAT 57716 || | || ||| || ||||||| || || ||||| ||||| || ||||| ||| Sbjct 3701 CTTACGGACAATGAACGATTCTTTATTACCCATGTATTGGCATTTTTTGCAGCATCGGAT 3642 Query 57717 GGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCG 57776 |||||||| || || ||||||| | | ||||| | ||||| ||||| | || || Sbjct 3641 GGTATTGTAAATGAAAATTTGGCCATGAATTTTTCCAATGAAGTACAAGTACCTGAAGCT 3582 Query 57777 AGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTA 57836 ||||| ||||| ||||||||| | || || ||||| | ||||||||| | |||||| | Sbjct 3581 AGATGTTTTTATGGATTTCAAATTGCTATCGAAAATATTCATTCAGAAGTTTATTCGTTG 3522 Query 57837 CTCATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGACTGTTCAACGCGATCGAA 57896 ||||| ||||| || | ||||||| | || ||| | | | || | || || || Sbjct 3521 CTCATTGATACTTATATCAAGGACATTGTGGAAAAAGATCGTGTTTTGAGGGCTATTGAT 3462 Query 57897 ACAATGCC-CGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCAC 57955 || || || | | | | || || | ||| | | |||||| || || | Sbjct 3461 ACGATTCCTTGTGTACAAC-GTAAAGCTAAATGGGCTCTTAAATGGTGCAATGGCAAAAT 3403 Query 57956 GGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGG 58015 || ||| || || | | | || || || || || |||||||| |||||||| || Sbjct 3402 TGCTGCGTATGCAGAACGTATTGTAGCCTTTGCTGCTGTTGAAGGTATTTTCTTTTCAGG 3343 Query 58016 --CAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTT 58073 || ||||| | || |||||| | |||||||| || ||||||| || | | ||| Sbjct 3342 ATCA-TTTTGC-TCGATCTTTTGGCTCAAGAAACGTGGTTTGATGCCTGGTTTAAGCTTT 3285 Query 58074 AGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTAC 58133 ||||| | || || || || |||||||| ||| ||| ||||| ||||| ||||| Sbjct 3284 TCGAACGAACTTATTTCTCGTGATGAGGGTCTTCATTGTGACTTTGCCTGCCTCATGTAT 3225 Query 58134 TCTCACATTGTCAATAAACCGACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTC 58193 || | | |||| || | | || || || || ||||| || || || Sbjct 3224 TCCAAGCTCATCAACAAGCTTTCTAACGAACGTATTCATGAAATTATTGGGGATGCTGTT 3165 Query 58194 GCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAAT 58253 || || ||||| | |||||| | ||| | || || || | | | ||||||||| Sbjct 3164 GCAATTGAAAAGCAATTTGTCTCGGAATCTCTTCCAGTAGAACTCATTGGTATGAACTCA 3105 Query 58254 GATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGGA 58313 | | |||| | |||||||| || ||| || | ||| ||| || ||||| Sbjct 3104 TCTCTCATGTGCGAATACATTGAATTCTGTGCTGATCGCCTT---CTCCAAGCCCTTGGA 3048 Query 58314 G--AGC-GTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAG 58370 | | | | |||||| | || ||||| || || | ||| | |||| || || | Sbjct 3047 GCTACCAAGCTTTACAATGCCAAGAATCCATTCGACTGGATGGACATGATATCTCTTCAA 2988 Query 58371 GGCAAGACAAACTTTTTCGAAAA 58393 || ||||| |||||||||||||| Sbjct 2987 GGAAAGACCAACTTTTTCGAAAA 2965 >seq5008 Length=14815 Score = 123 bits (136), Expect = 2e-23 Identities = 173/240 (72%), Gaps = 6/240 (3%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| |||||||||| || ||||| | || || ||||| || Sbjct 6222 ATGCAGATCTTCGTCAAGACATTGACAGGCAAGACCATCACGTTGGATGTCGAACCTTCG 6281 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | || | ||||| || | || |||||||||||| | || || || || Sbjct 6282 GATTCGATTGATAATGTCAAGCAAAAGATTCAAGACAAGGAAGGCATTCCTCCAGATCAA 6341 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 || ||| | || || || |||||||| | ||||| | | | ||| |||||||||| || Sbjct 6342 CAACGTTTGATCTTTGCAGGCAAACAACTTGAAGA-TGGACGTACTTTGAGCGATTACAA 6400 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT----AGAAGCG 31427 ||| ||||||||||| ||||||||| |||| ||| | || | || ||| ||||||| Sbjct 6401 CATCCAAAAAGAATCTACTCTTCATTTGGTCCTTCGTCTTCGTGGTGGTGGTAAGAAGCG 6460 >seq580 Length=37562 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||||||||| |||| ||||| || || || | || || ||||| || Sbjct 8493 ATGCAAATTTTCGTAAAGACGTTGACCGGCAAGACAATTACATTGGATGTCGAACCTTCG 8434 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 ||| | || | || ||||| | || || ||||||||| | || || |||||| Sbjct 8433 GACTCGATTGATAACGTAAAACAAAAGATCCAAGATAAGGAAGGCATCCCACCAGACCAG 8374 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || || | || || ||||||||||| | ||||| ||| | || ||||| ||| Sbjct 8373 CAACGATTGATTTTTGCTGGCAAACAACTCGAAGATGGCCGCACTCTCAGTGATTACAAC 8314 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||||| ||||| || |||||| |||| || Sbjct 8313 ATTCAAAAGGAATCCACACTTCATTTGGTCCT 8282 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || || ||| |||| || ||||| || ||| | || |||||||| ||| Sbjct 8037 ATGCAAATCTTTGTCAAAACTTTGACGGGAAAAACCATTACCTTGGATGTTGAACCATCC 7978 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 ||| | || | ||||| || | || |||||||||||| | || || || || Sbjct 7977 GACTCGATTGATAATGTCAAGCAAAAGATCCAAGACAAGGAAGGCATCCCTCCGGATCAA 7918 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||| | || |||||||| ||||| | |||||| | || | || || || ||| Sbjct 7917 CAACGTTTGATTTTCGCTGGTAAACAACTTGAAGACGGTCGTACATTAAGTGACTACAAC 7858 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTA 31402 |||||||| ||||| ||||| || ||||| Sbjct 7857 ATTCAAAAGGAATCTACTCTCCACTTGGTA 7828 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| ||||| |||| || || || || || | ||||| ||||| || Sbjct 8265 ATGCAAATTTTCGTCAAGACATTGACTGGAAAGACTATTACACTTGACGTGGAACCTTCA 8206 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 ||| | || | || ||||| | || ||||| |||||| | || || || || Sbjct 8205 GACTCAATTGATAATGTGAAACAAAAGATTCAAGACAAAGAAGGCATCCCTCCAGATCAA 8146 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||| |||| || ||||||||||| | ||||| | || | || || || ||| Sbjct 8145 CAACGTTTAATTTTTGCTGGCAAACAACTCGAAGATGGTCGTTCTCTCAGTGACTACAAC 8086 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||||| || ||||| ||||| ||||| || Sbjct 8085 ATTCAGAAGGAATCTACTCTACATCTAGT 8057 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| || || ||||| || || || || || || || | ||||| ||||| || Sbjct 8722 CATGCAAATCTTTGTCAAGACACTCACCGGAAAGACAATTACGTTGGACGTGGAACCTTC 8663 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| | || | ||||| || | ||| ||||||||||| | || || || || Sbjct 8662 GGACTCGATTGATAACGTCAAGCAAAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCA 8603 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370 || ||| | || || ||||||||||| |||||||| | | | ||| | || || || | Sbjct 8602 ACAACGTTTGATCTTTGCTGGCAAACAATTGGAAGA-TGGACGTACTCTTAGTGACTACA 8544 Query 31371 ACATTCAAAAAGAATCGAC 31389 | || ||||| |||||||| Sbjct 8543 ATATCCAAAAGGAATCGAC 8525 >seq2232 Length=15861 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| |||| ||||| || ||||| | || || || || Sbjct 393 AATATGCAGATTTTCGTCAAGACATTGACTGGCAAGACCATCACGTTGGATGTAGAGCCT 452 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || ||| | || | ||||| || | || |||||||||||| | || || || Sbjct 453 TCGGACTCGATTGACAACGTCAAGCAAAAGATCCAGGACAAGGAAGGTATTCCTCCAGAT 512 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 || || ||| | || || || ||||| || | ||||| | ||| |||||||||| Sbjct 513 CAACAACGTTTGATCTTTGCCGGCAAGCAACTCGAAGATGGTCGTACTTTGAGCGATTAC 572 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||||||||||| ||||||||| | || |||| ||| Sbjct 573 AACATTCAAAAGGAATCGACTTTGCACTTGGTCCTT 608 >seq2092 Length=13256 Score = 107 bits (118), Expect = 2e-18 Identities = 173/247 (70%), Gaps = 5/247 (2%) Strand=Plus/Plus Query 31186 ATCAAAC-ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTG 31244 ||| ||| ||||| || ||||||||||| |||| || || || ||||| | || || | Sbjct 11687 ATCGAACGATGCAGATCTTCGTAAAGACCTTGACGGGTAAGACCATCACATTGGATGTCG 11746 Query 31245 AACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGC 31304 |||| || || | || | ||||| || | ||| |||||||||||| | || | Sbjct 11747 AACCTTCGGATTCGATTGATAATGTCAAGCAAAAAATTCAAGACAAGGAAGGCATTCCTC 11806 Query 31305 CCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCG 31364 | || || || ||| | || || || ||||| || | ||||| | ||| |||||| Sbjct 11807 CAGATCAACAACGTTTGATCTTTGCCGGCAAGCAACTCGAAGATGGTCGCACTTTGAGCG 11866 Query 31365 ATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT---- 31420 |||| ||||| ||||| ||||||||| | || |||| ||| | || | || ||| Sbjct 11867 ATTACAACATCCAAAAGGAATCGACTTTGCACTTGGTCCTTCGCCTTCGTGGTGGTGGTA 11926 Query 31421 AGAAGCG 31427 ||||||| Sbjct 11927 AGAAGCG 11933 >seq419 Length=23932 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||||||||| |||||||| |||| || || |||||||| | ||||| ||||| || Sbjct 23285 CATGCAAATTTTTGTAAAGACGTTGACCGGTAAGACGATCACACTTGACGTCGAACCTTC 23344 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| | || | || ||||| | || |||||||||||| | || || || || Sbjct 23345 GGACTCCATTGATAATGTTAAACAAAAGATCCAAGACAAGGAAGGCATTCCTCCAGATCA 23404 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 || || || || || || || ||||| | ||||| ||| | ||||| || || Sbjct 23405 ACAACGCCTCATTTTTGCCGGTAAACAACTCGAAGATGGCCGTACTTTAAGCGACTACAA 23464 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||| ||||| ||||| || | ||| |||| Sbjct 23465 CATCCAAAAGGAATCTACATTGCATTTGGT 23494 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/216 (70%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| |||| || || || || || |||| || ||||| || Sbjct 23514 ATGCAAATCTTCGTGAAGACATTGACGGGTAAGACCATTACTCTCGATGTCGAACCATCG 23573 Query 31253 GA---CAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || || | |||| |||| || | || |||||||||||| | || || || Sbjct 23574 GATTCCATTGAC--AACG-TCAAGCAAAAGATTCAAGACAAGGAAGGCATTCCTCCAGAT 23630 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 || || || || || || ||||| ||||| | ||||| || | || || || Sbjct 23631 CAACAACGCCTCATTTTTGCTGGTAAACAACTTGAAGATGGCCGCACCCTTAGTGACTAC 23690 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||||| ||||| |||||||||||||| |||| ||| Sbjct 23691 AACATCCAAAAGGAATCGACTCTTCACTTGGTCCTT 23726 Score = 86.0 bits (94), Expect = 6e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| || || ||||| |||| || ||||| || ||| |||| || ||||| || Sbjct 23741 CATGCAAATCTTTGTCAAGACATTGACGGGTAAAACCATTACCCTCGATGTCGAACCTTC 23800 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | || | ||||| || | || |||||||||||| | || || || || Sbjct 23801 GGATTCTATTGACAATGTCAAGCAAAAGATCCAAGACAAGGAAGGCATTCCACCTGATCA 23860 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 || ||||| || || || ||||| || | ||||| ||| | ||||| || || Sbjct 23861 ACAACGTCTCATCTTTGCCGGCAAGCAACTCGAAGATGGCCGCACTCTCAGCGACTACAA 23920 Query 31372 CATTCAAAAAGA 31383 ||| ||||| || Sbjct 23921 CATCCAAAAGGA 23932 >seq224 Length=84125 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/232 (69%), Gaps = 3/232 (1%) Strand=Plus/Minus Query 22492 GTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGA 22551 ||| ||||||||||| || ||||| | ||||||||||| || || || || || || || Sbjct 28511 GTACATGTTGGATGTAAATGGTTCAATTGATTCATTGTTGCCAAGAATTTGTGCAGTAGA 28452 Query 22552 AGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACT 22611 ||| || ||||| || || | || || || || | | || ||||| | | || | Sbjct 28451 AGCTGTTGGCATTGGGGCAAGCAAAAGAGAATTGCGAATACCATGCTTGGCCACTTGAGC 28392 Query 22612 CTTGAGCATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTG 22671 ||||| | | ||||||||| |||| | || | ||| |||||||||| ||||| Sbjct 28391 TTTGAGTGTAGCCCAGTCCCAAAGATTTGTTGGAGAAACA---CCCCACATATCATATTG 28335 Query 22672 CAACACGCCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATAT 22723 || | || || | || |||| | ||||||||||| |||||| || Sbjct 28334 GAAGATACCTTTGCTTACAGGAGAGCCTGCATACGTTTCGTATGGACCAAAT 28283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445736684097360