Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq2584 93.3 8e-14 seq224 93.3 8e-14 >seq2584 Length=5567 Score = 93.3 bits (102), Expect = 8e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 101906 GCGGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCA 101965 || |||| ||||| ||||||||||| |||||||| || |||||| || |||| Sbjct 3392 GCAGAACGTATTGTAGCCTTTGCTGCTGTTGAAGGTATTTTCTTTTCAGGATCATTTTGC 3333 Query 101966 TCCATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTC 102025 || || || ||| ||||||| | ||| | |||||||| | | || || || || | Sbjct 3332 TCGATCTTTTGGCTCAAGAAACGTGGTTTGATGCCTGGTTTAAGCTTTTCGAACGAACTT 3273 Query 102026 ATTTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGC 102064 |||||| | || || ||||||||| | |||||||| ||| Sbjct 3272 ATTTCTCGTGATGAGGGTCTTCATTGTGACTTTGCCTGC 3234 >seq224 Length=84125 Score = 93.3 bits (102), Expect = 8e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 93546 TATGAGCTCTCTAATCACATATTCGTTCACCACTTGGAATGATCCTGAAAGTACATTACG 93605 ||| || ||| | |||| ||||| ||| || | | ||| || | ||| ||| ||| Sbjct 28574 TATAAGTTCTTTCATCAAATATTTGTTGACAATTGTAAATTCACCAGCAAGAACACGACG 28515 Query 93606 ATTATACATGTTGGACGTTAAAGGCTCAAAGGATTCAGAGTTGCCCAGGATCTGTGCAGT 93665 | ||||||||||| || || || |||| |||||| |||||| || || |||||||| Sbjct 28514 AGAGTACATGTTGGATGTAAATGGTTCAATTGATTCATTGTTGCCAAGAATTTGTGCAGT 28455 Query 93666 GGATGCAGTAGGCATGGGAGCAACAAACATTGAATTGTGAACACCATACTT 93716 || || || ||||| || |||| || | |||||| ||| ||||| ||| Sbjct 28454 AGAAGCTGTTGGCATTGGGGCAAGCAAAAGAGAATTGCGAATACCATGCTT 28404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989516382653015