Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq224 260 2e-64 seq2584 241 2e-58 >seq224 Length=84125 Score = 260 bits (288), Expect = 2e-64 Identities = 1177/1841 (64%), Gaps = 55/1841 (3%) Strand=Plus/Minus Query 62078 ACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGT 62137 |||||| |||||||| || || || || || | |||| ||||||||||||| || Sbjct 28856 ACGTAGGTAGTACATGCCTGTCTTAAGTCCACGTTTCCAAGCGTAAAAATGCATCGAGGT 28797 Query 62138 TAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAA 62197 |||||| ||| ||||| || ||||||| |||||| ||||| |||| ||| || Sbjct 28796 GAGTTTGCTCACACTTGGATCGGCAATATGGACATTCATCGATTGCGATTGACAGATAAA 28737 Query 62198 GGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTT 62257 || || | || ||||| | | || || ||||||| || |||||| | || || Sbjct 28736 TGCACCACGATCAGCAGCAAGATCTAAAATAATCTTTTGCTTAACTTCCCATACTGTCTT 28677 Query 62258 ATAAACTCGCTTAATATCTTCTGGAAGGTTTG-TA--TTCTGAATGGATCCACCATCTAC 62314 |||| || ||| || ||||| || || || |||| |||| ||| Sbjct 28676 GTAAATGTCTTTGATACGTTTTGGAATACTTAATACGTTTTGAACACTACCACGATCATG 28617 Query 62315 CATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAA---CTCTAAG 62371 | ||| ||| | ||| ||||||| | | | | || || || | | Sbjct 28616 TAAAATTTGATTACGTACTTCAGCATTCCAAAGA---CCCAAAGATATAAGTTCTTTCAT 28560 Query 62372 GAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACT 62431 | || ||| || | | ||||| |||| | || | |||| ||| || || Sbjct 28559 CAAATATTTGTTGACAATTGTAAATTCACCAGCAAGAACACGACGAGAGTACATGTTGGA 28500 Query 62432 GGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCAT 62491 ||| | ||||| | || ||||| || || | |||||| ||||| || || || ||||| Sbjct 28499 TGTAAATGGTTCAATTGATTCATTGTTGCCAAGAATTTGTGCAGTAGAAGCTGTTGGCAT 28440 Query 62492 AGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGATGT 62549 || || | ||| | | ||| | || ||| ||| | | | || | |||| || ||| Sbjct 28439 TGGGGCAAGCAAAAGAGAATTGCGAATACC--ATGCTTGGCCACTTGAGCTTTGAG-TGT 28383 Query 62550 T-CCCAATTCCAAAGATCCGACGGTACAACANNNNNNNNNNNATATTGTAGAATACCGTT 62608 |||| | |||||||| | || |||| |||||| | ||||| || Sbjct 28382 AGCCCAGTCCCAAAGATTTGTTGGAGAAACACCCCACATATCATATTGGAAGATACCTTT 28323 Query 62609 ACTGGCGTACGATCCTACATATGTATCATATGGTCC---TTCCTTCTCAGCTAGTTTACA 62665 || | || ||| |||| || || ||||| || ||| || || | | | Sbjct 28322 GCTTACAGGAGAGCCTGCATACGTTTCGTATGGACCAAATTCTTTGGCAATTTCCATGGA 28263 Query 62666 ACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGAT-CTTGTG 62724 | || ||||| |||| || ||||||||||| | |||| || | |||| | Sbjct 28262 TGTTTCCATGGATGCATGGTAA---ATAGTTTCAAAGATTTGAATATTGAGTTTCTTG-G 28207 Query 62725 CTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACAC 62784 |||| | ||||| |||||| | ||||||||| || || || | |||||||||| Sbjct 28206 CTTCAGCAGATTCAAAAGGATAACCCATGAGAATAAAGGCATCAGCAAGCCCTTGAACAC 28147 Query 62785 CAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAAT 62844 ||||||| ||||| | ||| | | |||| || ||||||| |||||| || || | Sbjct 28146 CAATACCAATAGGACGATGACGCATATTGCTTCGTTTAGCTTCTTCAATAGGGTAGTAGT 28087 Query 62845 TAATATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGTT 62901 | || || || | ||| || | ||| | | ||||| |||| | | | || | Sbjct 28086 TGATTTCAATCACTTTGTTTAAATTGCGAGTAACAAT---TTTGGTGATTTTATGCAAAT 28030 Query 62902 TGAGAAAATCAAATCGCCCATCTATTACAAACATGTTCAA--TGCAACAGATGCCAGATT 62959 || ||| |||||| ||||| | |||| || || || |||| ||||||| ||| Sbjct 28029 TGGTAAAGTCAAATACACCATCATTGACAA--ATTTTGAAAGAGCAATCGATGCCAAATT 27972 Query 62960 ACACACGGCTACCTCA--TTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTA 63017 ||||| || || ||| || || | | ||||| || | ||| ||| | ||||| Sbjct 27971 GCACACAGCCACTTCATCTTTGCTT--GTATATTCGATAACTTCACAGCACAAGTTACTC 27914 Query 63018 CACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTG---TTACACGCATCCTTATAA 63074 | || ||||| ||||| |||||||| | || |||| || || ||||| || || Sbjct 27913 GATTTAATAGTACCTAAGTTTTGTTGGT---TCGATTTGGAATTGCAAGCATCTTTGTAC 27857 Query 63075 AGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGA 63134 | || |||| ||||||||||| || ||||| || | ||| || ||| | || Sbjct 27856 AACATATATGGTGTACCAGTTTCGATTTGAGAATCGAGAATGGCAAACCATAATTGCTGA 27797 Query 63135 GCCTTTATTATAGATTTGTATCTC--CTTTCTCTTTCGTATAGAGTATACAATCGTTCGA 63192 ||||| ||| | ||| | | | | ||| ||| || || ||||| ||| | Sbjct 27796 GCCTTGATTGT--CTTTCGAGCACGACCTTCAGATTCAAATTTGGTGTACAAAGCTTCAA 27739 Query 63193 ACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGA--CCA 63250 | || | ||||| || | ||| | || | ||||| || || | || || ||| Sbjct 27738 ATTCCTTGCCCCAGCAATCTTGCAAGCCAGAAGCTTCATTTGGGCAAA--AAAGACTCCA 27681 Query 63251 CTCTCCGTCATCCTTC-ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATA 63309 || || | | |||| || || |||||||| | |||||| ||||| | || ||| | Sbjct 27680 ATCACCAT-TTGCTTCGACACGCTTCATAAACAAATCAGGGATCCACAAGGCATAAAAGA 27622 Query 63310 GATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAA 63369 |||| | | | ||| || || || ||| || || ||||| | ||| | | || Sbjct 27621 GATCACGAGCACGGTGTAGTTCATTGCCATGATTTTTCTTGAGATCCAAAAACTCAAAAA 27562 Query 63370 TATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCT 63429 |||||| |||||| ||||| | || ||||| | || || || || || | Sbjct 27561 TATCAGCATGCCATGGTTCAAGATACATGGCAAACGAACCCTTACGCTTACCACCACCTT 27502 Query 63430 GATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATA 63489 | || | || | |||||| | ||| | |||| | ||| ||||| |||||||| ||| Sbjct 27501 GGTCAACATAGCGAGCGGTATCATTGAATACTCGAAGCATGGGAATGATACCGTTCGATG 27442 Query 63490 TACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACCTA 63549 ||||||||||| ||||| | | | |||||||| || | || | Sbjct 27441 AGCCATTGGTACCACGAATATAACTATTTGTTGAGCGAATATTGTGGATATTCACGCCGA 27382 Query 63550 TTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTA 63609 | || || ||| ||| || || | || ||| |||| || || ||||| || ||||| | Sbjct 27381 TACCACCAGCCCATTTGGAAATACAAGCACATTGTTTCAAAGTATCATAAATACCTTCAA 27322 Query 63610 TGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCG 63669 | ||| || ||||| | ||||| || |||| ||| |||| | ||| || | Sbjct 27321 TCGAATCGTCCTTCATGGCCAAAAGAAAGCAAGACGACAATTGTGGACGTGGAGTACCAG 27262 Query 63670 CATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA-GAAAGTAGATTGTACGTC 63728 |||| || | ||||| | ||| || || || | ||| | | ||| | || || Sbjct 27261 CATTGAAAAGAGTAGGTGTAGCATGGGTGAAGAACATTTGACTCATGTA-TTCATAAGTG 27203 Query 63729 TCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGC 63788 || | |||| | ||||| || |||||| || || || |||||||| | ||||||| Sbjct 27202 TCCAAAGCTCCAGCAATATCTTCTTTATGAATACCAACAGCAACACGCATGATCATGTGC 27143 Query 63789 TGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTA 63848 ||||||| |||| || ||| |||| || | ||| ||| ||||||||||||||| Sbjct 27142 TGAGGTCGTTCACAAACTTTTCCATTTACTTGAAGCAAATAGCTCTTTTCCAAAGTTTTA 27083 Query 63849 AAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 || ||||| || | ||| ||| || || || ||||||| Sbjct 27082 AATCCAAAGTAATCATATTCAAAATCACGATCAGAAATAAT 27042 >seq2584 Length=5567 Score = 241 bits (266), Expect = 2e-58 Identities = 594/890 (67%), Gaps = 17/890 (2%) Strand=Plus/Plus Query 33296 GTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCCAT 33355 ||||||||| ||||| ||||||||||| || || ||||||| | ||||| | ||||| Sbjct 2949 GTATTCACCGACACGCTTTTCGAAAAAGTTGGTCTTTCCTTGAAGAGATATCATGTCCAT 3008 Query 33356 GAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATCAATCT 33415 | || || ||||| | ||||||||| || || ||| | | | | | Sbjct 3009 CCAGTCGAATGGATTCTTGGCATTGTAAAGCTTGGTAGCTCCAAGGGCTTGGAGAAGGCG 3068 Query 33416 ATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTAAC 33475 ||| || |||||| || ||| ||| | | ||||| || ||||||| || Sbjct 3069 ATCAGCACAGAATTCAATGTATTCGCACATGAGAGATGAGTTCATACCAATGAGTTCTAC 3128 Query 33476 TGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATAA-ATC 33534 |||||||| | | | ||||| | |||||| | || |||| ||||| || Sbjct 3129 TGGAAGAGATTCCGAGACAAATTGCTTTTCAATTGCAACAGCATCCCCAATAATTTCATG 3188 Query 33535 TAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAA-ACATCAAACATGCGAAATCG 33593 | ||| || | | | || || | | || |||| | || || || || Sbjct 3189 AATACGTTCGTTAGAAAGCTTGTTG--ATGAGCTTGGAATACATGAGGCAGGCAAAGTCA 3246 Query 33594 CAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGG 33653 || || |||||||| || | | ||| | |||||| ||||| | | || ||||| | Sbjct 3247 CAATGAAGACCCTCATCACGAGAAATAAGTTCGTTCGAAAAGCTTAAACCAGGCATCAAA 3306 Query 33654 CCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACT 33713 ||||| || || |||||||| || || |||||||| |||||||| || ||||| || Sbjct 3307 CCACGTTTCTTGAGCCAAAAGATCGAGCAAAATGATCCTGAAAAGAAAATACCTTCAACA 3366 Query 33714 GCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGT---CATGTATCCACTTTTGA 33770 ||||||||||| | || | ||| |||| | || | | ||| ||| || || Sbjct 3367 GCAGCAAAGGCTACAATACGTTCTGCATACGCAGCAATTTTGCCATTGCACCATTTAAGA 3426 Query 33771 GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttt 33830 ||||| | || || || ||||||||| ||||| || || || | || | | | | Sbjct 3427 GCCCATTTAGCTTTACGTTGTACACAAGGAATCGTATCAATAGCCCTCAAAACACGATCT 3486 Query 33831 ttttCATTACTATCTTTAACATAAGTATCGATCA--AAAGACTATACATTTCCGAATGAA 33888 ||||| | | || || | ||||||||| || | || || || || ||| ||||||| Sbjct 3487 TTTTCCACAATGTCCTTGATATAAGTATCAATGAGCAACGAATAAAC--TTCTGAATGAA 3544 Query 33889 TGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC-GGTAATCTGCACTTC- 33946 | ||||| || || || |||||||| || ||||||||||| || |||| | || ||||| Sbjct 3545 TATTTTCGATAGCAATTTGAAATCCATAAAAACATCTAGCTTCAGGTACT-TGTACTTCA 3603 Query 33947 -TGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACG 34005 || | ||| || | || ||||||||||| || || ||||| ||||||||||| | Sbjct 3604 TTGGAAAAATTCATG--GCCAAATTTTCATTTACAATACCATCCGATGCTGCAAAAAATG 3661 Query 34006 CCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATAT 34065 |||||||||| | ||||| || ||| | || ||||| ||||||| || |||| Sbjct 3662 CCAATACATGGGTAATAAAGAATCGTTCATTGTCCGTAAGTTTTGTCCAATCTTTCATAT 3721 Query 34066 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 34125 | | | ||| | |||||| | |||||||| || || || || |||||||| | Sbjct 3722 CATGGACAAGATCTAATTCTTCTGCAGTCCAAAAACTAGCTTCAGCTTTCTTATACATTT 3781 Query 34126 TCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 34175 ||| | || | ||| || || |||| ||||||| |||||| ||| Sbjct 3782 CCCACACATCTGTGTGTTGAATAGGAAAAAGCACAAATCGATTTGGGTTT 3831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629775614784240