Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq2584 217 1e-51 seq224 178 1e-39 >seq2584 Length=5567 Score = 217 bits (240), Expect = 1e-51 Identities = 392/567 (69%), Gaps = 7/567 (1%) Strand=Plus/Plus Query 11622 ACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAA 11681 |||| | || ||||| |||||||| | ||| || || | | || ||||| || |||| Sbjct 3227 ACATGAGGCAGGCAAAGTCACAATGAAGACCCTCATCACGAGAAATAAGTTCGTTCGAAA 3286 Query 11682 ATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAA-TGAACCA 11740 | |||| || |||||||| || ||||| || | |||||| || | |||||| ||| || Sbjct 3287 AGCTTAAACCAGGCATCAAACCACGTTTCTTGAGCCAAAAGATCG-AGCAAAATGATCCT 3345 Query 11741 GAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCT---TG 11797 |||||||| || || || ||||| ||||| ||||| | | |||| |||| | | Sbjct 3346 GAAAAGAAAATACCTTCAACAGCAGCAAAGGCTACAATACGTTCTGCATACGCAGCAATT 3405 Query 11798 TTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCT 11857 |||| | |||||| ||||| | |||||| || ||| || || || || Sbjct 3406 TTGCCATTGCACCATTTAAGAGCCCATTTAGCTTTACGTTGTACACAAGGAATCGTATCA 3465 Query 11858 ATAGCGTTAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAA 11917 ||||| | || | | | |||||| | | | || | | ||| ||||| || | || Sbjct 3466 ATAGCCCTCAAAACACGATCTTTTTCCACAATGTCCTTGATATAAGTATCAATGAGCAAC 3525 Query 11918 CTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCC 11977 ||| | |||||||||||||||||| ||||| |||||||||||||| ||||||| || Sbjct 3526 GAATAAACTTCTGAATGAATATTTTCGATAGCAATTTGAAATCCATAAAAACATCTAGCT 3585 Query 11978 TCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCA 12037 || | ||||| || |||| | || ||||| ||||||||||||||||| Sbjct 3586 TCAGGTACTTGTACTTCATTGGAAAAATTCATGGCCAAATTTTCATTTACAATACCATCC 3645 Query 12038 CTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTA 12097 | |||||||||||| | || ||| | |||||| || ||| | | || | ||| Sbjct 3646 GATGCTGCAAAAAATGCCAATACATGGGTAATAAAGAATCGTTCATTGTCCGTAAGTTTT 3705 Query 12098 TCCCAATCATCTAAATCTTTTGATAA-ATCTACTTCTTCAACGGTCCAAAAACTTGCCAC 12156 |||||| | | ||| | || || ||||| |||||| | ||||||||||| || | Sbjct 3706 GTCCAATCTTTCATATC-ATGGACAAGATCTAATTCTTCTGCAGTCCAAAAACTAGCTTC 3764 Query 12157 TGATTGTTTATACATTTTCCAGATATC 12183 | || |||||||||| ||| | ||| Sbjct 3765 AGCTTTCTTATACATTTCCCACACATC 3791 >seq224 Length=84125 Score = 178 bits (196), Expect = 1e-39 Identities = 1145/1823 (63%), Gaps = 51/1823 (3%) Strand=Plus/Minus Query 36835 TAATACATTCCAGTTTTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTT 36894 || ||||| || || || || || | |||| ||||||||||||| ||| ||||| Sbjct 28849 TAGTACATGCCTGTCTTAAGTCCACGTTTCCAAGCGTAAAAATGCATCGAGGTGAGTTT- 28791 Query 36895 GCGTATG-TAGGATTATCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACC 36953 || | | |||| | |||| | |||| ||||| |||| ||||| ||||| Sbjct 28790 GCTCACACTTGGATCGGCAATATGGACATTCATCGATTGCGATTGACAGATAAATGCACC 28731 Query 36954 TCTGTCGGCTGCCATTTCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATAT 37013 | || || || | ||||||||| ||||| | ||||| || || || || || Sbjct 28730 ACGATCAGCAGCAAGATCTAAAATAATCTTTTGCTTAACTTCCCATACTGTCTTGTAAAT 28671 Query 37014 TTGTTTTATATTATCTGGTAAATCTAAA---TGTTGAATAGAACCA---TTATGTAACAC 37067 | ||| ||| | ||| | | ||| | ||||| | |||| | |||||| Sbjct 28670 GTCTTTGATACGTTTTGGAATACTTAATACGTTTTGAACACTACCACGATCATGTAA--- 28614 Query 37068 AATTGTATTCTTTATGTCATTATTCCACATATTTCTACTTATTAGTTCTCTCAATAGGTG 37127 |||| ||| || ||| |||||| | | | ||| |||||| ||| | | Sbjct 28613 AATTTGATTACGTACTTCAGCATTCCAAAGACCCAAAGATATAAGTTCTTTCATCAAATA 28554 Query 37128 TGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATA 37187 | || |||| ||| || |||| | || | | | || || ||| ||| | Sbjct 28553 TTTGTTGACAATTGTAAATTCACCAGCAAGAACACGACGAGAGTACATGTTGGATGTAAA 28494 Query 37188 TGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGC 37247 ||||||||| || ||||| || | | ||||| | ||||| || || |||||||| || Sbjct 28493 TGGTTCAATTGATTCATTGTTGCCAAGAATTTGTGCAGTAGAAGCTGTTGGCATTGGGGC 28434 Query 37248 TATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATC 37307 | | ||| ||| | | ||||| | | | ||| ||| | ||| || Sbjct 28433 AAGCAAAAGAGAATTGCGAATACCATGCTTGGCCACTTGAGCTTTGAGTGTAGCCCAGTC 28374 Query 37308 CCATAAATCTGTTGGGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGG 37367 ||| | || |||||| ||||||||||||||| | |||||||| || | || Sbjct 28373 CCAAAGATTTGTTGGAGAAACACCCCACATATCATATTGGAAGATACCTTTGCTTACAGG 28314 Query 37368 AGAATCGTTATATGTCTCATAAGGTCCGTAAAT--TTTAGCTAGTTCGCAACTA-GATTC 37424 ||| | ||| || || || || || |||| ||| || | ||| || | | ||| Sbjct 28313 AGAGCCTGCATACGTTTCGTATGGACC--AAATTCTTTGGCAATTTC-CATGGATGTTTC 28257 Query 37425 TAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCT 37484 | | |||| || || ||||| || ||||| ||||| | | | || ||||| | Sbjct 28256 CATGGATGCATGGTAAATAGTTTCAAAGATTTGAATATTGAGTTTCTTGGCTTCAGCAGA 28197 Query 37485 ATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTAT 37544 || || | ||| |||| | ||||| ||||||| | || |||||||| ||||| || Sbjct 28196 TTCAAAAGGATAACCCATGAGAATAAAGGCATCAGCAAGCCCTTGAACACCAATACCAAT 28137 Query 37545 GGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACT-GGATAATAATTGATATCTA 37603 || | ||| | |||| || | |||| ||| | || || || ||||| || | Sbjct 28136 AGGACGATGACGCATATTGCTTCGTTTAGCTTCT-TCAATAGGGTAGTAGTTGATTTCAA 28078 Query 37604 TTATTTTATTTAGATTTTTAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAACATAA 37663 | | ||| |||| ||| | | ||||| || ||| | ||| ||| || || Sbjct 28077 TCACTTTGTTTAAATTGCGAGTAACAATTTTGGTGATTTTATGCAAATTGGTAAAGTCAA 28018 Query 37664 ATACGTTATTATTAACAAATTTACTCAACGA--AATAGATCCTAGATTACATACAGCAAC 37721 |||| || ||| |||||||| | || || ||| ||| | | ||| || ||||| || Sbjct 28017 ATACACCATCATTGACAAATTT--TGAAAGAGCAATCGATGCCAAATTGCACACAGCCAC 27960 Query 37722 TTCATCTTCGTTACTAAATTGTATAA--TCTCTGTACAGAGATTACTCGATCTAATTGTT 37779 |||||||| | | || ||| |||| || | | ||| || ||||||||| |||| || Sbjct 27959 TTCATCTTTGCTTGTATATTCGATAACTTCACAGCACA-AG-TTACTCGATTTAATAGTA 27902 Query 37780 CCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTT 37839 || || || ||| || ||||| ||| |||| |||||| || | ||||| || || Sbjct 27901 CCTAAGTTTTGTTGGTTCGATTTGGAATTGCAAGCATCTTTGTACAACATATATGGTGTA 27842 Query 37840 CCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCTTGCTTTAACGATCGCT 37899 || ||| ||||||| |||| ||| | |||||| ||||| || | || Sbjct 27841 CCAGTTTCGATTTGAGAATCGAGAATGGCAAACCATAA-----TTGCT-----GAGC-CT 27793 Query 37900 TTAAtttttttC-----------TTTGTTTCGTATTCTATATATAATTTGTTAAAATCAT 37948 | | | | |||| | | ||| ||| | || || | ||| || | Sbjct 27792 TGATTGTCTTTCGAGCACGACCTTCAGATTCAAATTTGGTGTACAAAGCTTCAAATTCCT 27733 Query 37949 TCCCCCATACATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCAT 38008 | ||||| ||| || || | | ||| ||| || | ||| ||| || ||| Sbjct 27732 TGCCCCAGCAATCTTGCAAGCCAGAAGCTTCATTTGGGCAAAAAAGACTCCAATCACCAT 27673 Query 38009 CTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGG 38068 | ||| || || | |||||| |||||||| | ||| || ||| ||| | ||| | Sbjct 27672 TTGCTTCGACACGCTTCATAAACAAATCAGGGATCCACAAGGCATAAAAGAGATCACGAG 27613 Query 38069 TTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCT-TAGAAAATCGAATATATCAGCG 38127 | | | ||| || || ||| |||||| || | | ||| || || |||||||| Sbjct 27612 CACGGTGTAGTTCATTGCCATGATT-TTTCTTGAGATCCAAAAACTCAAAAATATCAGCA 27554 Query 38128 TGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATA 38187 ||||||||||| | ||| || | | | || | ||| |||| || || | || | Sbjct 27553 TGCCATGGTTCAAGATACATGGCAAACGAACCCTTACGCTTACCACCACCTTGGTCAACA 27494 Query 38188 TATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTT 38247 || | | | || | ||| ||| || | ||| || | ||||| || ||| ||| || Sbjct 27493 TAGCGAGCGGTATCATTGAATACTCGAAGCATGGGAATGATACCGTTCGATGAGCCATTG 27434 Query 38248 ATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCT 38307 |||| |||||| || | | || ||||| || || || || ||||| Sbjct 27433 GTACCACGAATATAACTATTTGTTGAGCGAATATTGTGGATATTCACGCCGATACCACCA 27374 Query 38308 GCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCA 38367 || ||| || || |||| |||||||| || |||||| | |||||||| || || Sbjct 27373 GCCCATTTGGAAATACAAGCACATTGTTTCAAAGTATCATAAATACCTTCAATCGAATCG 27314 Query 38368 TCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAAT 38427 ||||| || | | | ||| ||| |||| ||| || |||||| || || || || Sbjct 27313 TCCTTCATGGCCAAAAGAAAGCAAGACGACAATTGTGGACGTGGAGTACCAGCATTGAAA 27254 Query 38428 AATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACA 38487 | ||||| | ||||| |||| | ||| || || | ||| || || | | Sbjct 27253 AGAGTAGGTGTAGCATGGGTGAAGAACATTTGACTCATGTATTCATAAGTGTCCAAAGCT 27194 Query 38488 TCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTT 38547 || | ||||| | |||||||| | || || | ||| | ||| || || |||| | Sbjct 27193 CCAGCAATATCTTCTTTATGAATACCAACAGCAACACGCATGATCATGTGCTGAGGTCGT 27134 Query 38548 TCTATTATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAA 38607 || | ||| ||| || ||| | ||| ||||| || ||||| | |||||| Sbjct 27133 TCACAAACTTTTCCATTTACTTGAAGCAAATAGCTCTTTTCCAAAGTTTTAAATCCAAAG 27074 Query 38608 TAACTATATGAATAATCTCTATC 38630 ||| |||| | |||| | ||| Sbjct 27073 TAATCATATTCAAAATCACGATC 27051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468493566965520