Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq2584 264 1e-65 seq224 221 2e-52 >seq2584 Length=5567 Score = 264 bits (292), Expect = 1e-65 Identities = 439/627 (70%), Gaps = 13/627 (2%) Strand=Plus/Plus Query 36150 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 36209 |||| | || || || || || || |||||||| || | | ||| | |||||| |||| Sbjct 3227 ACATGAGGCAGGCAAAGTCACAATGAAGACCCTCATCACGAGAAATAAGTTCGTTCGAAA 3286 Query 36210 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAG 36269 | | | || ||||| | ||||| || || |||||||| || || ||||||||| | Sbjct 3287 AGCTTAAACCAGGCATCAAACCACGTTTCTTGAGCCAAAAGATCGAGCAAAATGATCCTG 3346 Query 36270 AAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGT 36329 |||||||||| ||||| || || |||||||| | || | ||| |||| | ||| | | Sbjct 3347 AAAAGAAAATACCTTCAACAGCAGCAAAGGCTACAATACGTTCTGCATACGCAGCAATTT 3406 Query 36330 ---CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 36386 ||| ||| || ||||||| | || || || ||||||||| || || || | Sbjct 3407 TGCCATTGCACCATTTAAGAGCCCATTTAGCTTTACGTTGTACACAAGGAATCGTATCAA 3466 Query 36387 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCA--AAAG 36444 |||| | || | | | |||||| | | || || | ||| |||||||| | || | Sbjct 3467 TAGCCCTCAAAACACGATCTTTTTCCACAATGTCCTTGATATAAGTATCAATGAGCAACG 3526 Query 36445 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGC 36504 | || || ||| |||||||| ||||| || || ||||||||||| || ||||||||||| Sbjct 3527 AATAAAC--TTCTGAATGAATATTTTCGATAGCAATTTGAAATCCATAAAAACATCTAGC 3584 Query 36505 CTC-GGTAATCTGTACTTC--TGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCC 36561 || |||| | |||||||| || | ||| || | || ||||||||||| || || || Sbjct 3585 TTCAGGTACT-TGTACTTCATTGGAAAAATTCATG--GCCAAATTTTCATTTACAATACC 3641 Query 36562 GTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAG 36621 || ||||||||||| ||||||||||| | ||||| || ||| || || || Sbjct 3642 ATCCGATGCTGCAAAAAATGCCAATACATGGGTAATAAAGAATCGTTCATTGTCCGTAAG 3701 Query 36622 TTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGC 36681 ||| ||||||| || ||||| | | ||| | |||||| | |||||||| || Sbjct 3702 TTTTGTCCAATCTTTCATATCATGGACAAGATCTAATTCTTCTGCAGTCCAAAAACTAGC 3761 Query 36682 CTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCT 36741 || || || |||||||| | ||| | || | |||||| ||||||| ||||||| Sbjct 3762 TTCAGCTTTCTTATACATTTCCCACACATCTGTGTGTTGAATAGGAAAAAGCACAAATCG 3821 Query 36742 ATTTTGATTTTTTGCAAGGATTGGTTC 36768 |||| | |||| | | || |||||| Sbjct 3822 ATTTGGGTTTTCCGATAAGAATGGTTC 3848 >seq224 Length=84125 Score = 221 bits (244), Expect = 2e-52 Identities = 796/1221 (65%), Gaps = 38/1221 (3%) Strand=Plus/Minus Query 65481 TAAATGGTTTCGAAGATCTTCTTATTTAGAT-CTTGTGCTTCCAGGCTAT-CAAATGGAT 65538 ||||| ||||| ||||| | |||| || | |||| ||||| || || |||| |||| Sbjct 28243 TAAATAGTTTCAAAGATTTGAATATTGAGTTTCTTG-GCTTC-AGCAGATTCAAAAGGAT 28186 Query 65539 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 65598 || | ||||||||| || || || | ||||||||||||||||| ||||| | ||| | Sbjct 28185 AACCCATGAGAATAAAGGCATCAGCAAGCCCTTGAACACCAATACCAATAGGACGATGAC 28126 Query 65599 TCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGA 65658 | |||| || ||||||| |||||| || || || || || || | ||| || | Sbjct 28125 GCATATTGCTTCGTTTAGCTTCTTCAATAGGGTAGTAGTTGATTTCAATCACTTTGTTTA 28066 Query 65659 GATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCTCAT 65715 ||| | | |||||| ||| | | | || ||| ||| |||||| ||| Sbjct 28065 AATTGCGAGTAACAATT---TTGGTGATTTTATGCAAATTGGTAAAGTCAAATACACCAT 28009 Query 65716 CTATTACAAACATGTTCAATG--CAACAGATGCCAGATTACAAACGGCTACCTCAT--TA 65771 | | ||||| | || || | ||| ||||||| ||| || || || || |||| | Sbjct 28008 CATTGACAAA--TTTTGAAAGAGCAATCGATGCCAAATTGCACACAGCCACTTCATCTTT 27951 Query 65772 GCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTT 65831 || | | ||||| || | ||| ||| | ||||| | || || || ||||| ||| Sbjct 27950 GCTT--GTATATTCGATAACTTCACAGCACAAGTTACTCGATTTAATAGTACCTAAGTTT 27893 Query 65832 TGTTGATTACTCTTTTTG---TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTT 65888 ||||| || | |||| || || ||||| || || | || |||| ||||||||| Sbjct 27892 TGTTGGTT---CGATTTGGAATTGCAAGCATCTTTGTACAACATATATGGTGTACCAGTT 27836 Query 65889 TCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTAT 65948 || || ||||| || | ||| || ||| | ||||||| ||| | ||| | Sbjct 27835 TCGATTTGAGAATCGAGAATGGCAAACCATAATTGCTGAGCCTTGATTGTC--TTTCGAG 27778 Query 65949 CTCTT--TTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGT 66006 | | ||| ||| || || ||||| ||| || || | ||||| || | Sbjct 27777 CACGACCTTCAGATTCAAATTTGGTGTACAAAGCTTCAAATTCCTTGCCCCAGCAATCTT 27718 Query 66007 CCAATCCAGGACATTCATCCGGACACATCAACGAC--CACTCTCCGTCATCCTTC-ACTC 66063 ||| |||| | ||||| || || | || ||| || || || | | |||| || | Sbjct 27717 GCAAGCCAGAAGCTTCATTTGGGCAAA--AAAGACTCCAATCACCATT-TGCTTCGACAC 27661 Query 66064 GTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCT 66123 | |||||||| | |||||| ||||| | || ||| | ||| | | | ||| | Sbjct 27660 GCTTCATAAACAAATCAGGGATCCACAAGGCATAAAAGAGATCACGAGCACGGTGTAGTT 27601 Query 66124 CGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCA 66183 | || || ||| || || ||||| | ||| | | ||||||| |||||| ||||| | Sbjct 27600 CATTGCCATGATTTTTCTTGAGATCCAAAAACTCAAAAATATCAGCATGCCATGGTTCAA 27541 Query 66184 AGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGT 66243 || ||||| | || || || || || || || | || | |||||| | Sbjct 27540 GATACATGGCAAACGAACCCTTACGCTTACCACCACCTTGGTCAACATAGCGAGCGGTAT 27481 Query 66244 TATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATAT 66303 ||| | |||| | ||| ||||| ||||| || |||| |||||||| || |||| Sbjct 27480 CATTGAATACTCGAAGCATGGGAATGATACCGTTCGATGAGCCATTGGTACCACGAATAT 27421 Query 66304 AGCTTCCACTTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGA 66363 | || ||| |||||||| || | || || || || ||| ||| || | Sbjct 27420 AACTATTTGTTGAGCGAATATTGTGGATATTCACGCCGATACCACCAGCCCATTTGGAAA 27361 Query 66364 TTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAA 66423 | | || ||| |||| || |||||||| || || || || ||| ||| ||||| | Sbjct 27360 TACAAGCACATTGTTTCAAAGTATCATAAATACCTTCAATCGAATCGTCCTTCATGGCCA 27301 Query 66424 GTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAG 66483 ||||| || |||| ||| |||| ||| || ||||| || | ||||| | || Sbjct 27300 AAAGAAAGCAAGACGACAATTGTGGACGTGGAGTACCAGCATTGAAAAGAGTAGGTGTAG 27241 Query 66484 CGTGCGTAAACCATTTTTCAGAAAGTAGATTG-TACGTCTCAATAGCTGAGTCTATATCC 66542 | || || || | ||| | | | ||| || || || | |||| | ||||| Sbjct 27240 CATGGGTGAAGAACATTTGACTCA-TGTATTCATAAGTGTCCAAAGCTCCAGCAATATCT 27182 Query 66543 CATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTG 66602 || |||||| || || || |||||||| | |||||||||||||| |||| | | ||| Sbjct 27181 TCTTTATGAATACCAACAGCAACACGCATGATCATGTGCTGAGGTCGTTCA-CAAACTTT 27123 Query 66603 TTG-TTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGA 66661 | |||| || | ||| ||| ||||||||||||||||| ||||| || | ||| Sbjct 27122 TCCATTTACTTGAAGCAAATAGCTCTTTTCCAAAGTTTTAAATCCAAAGTAATCATATTC 27063 Query 66662 AAAGTCTCGTTCGTAAATAAT 66682 ||| || || || ||||||| Sbjct 27062 AAAATCACGATCAGAAATAAT 27042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658128924555720