Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq224 264 2e-65 seq2584 242 5e-59 >seq224 Length=84125 Score = 264 bits (292), Expect = 2e-65 Identities = 1177/1836 (64%), Gaps = 45/1836 (2%) Strand=Plus/Minus Query 78750 ACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGT 78809 |||||| |||||||| || || || || || | |||| |||| |||||||| || Sbjct 28856 ACGTAGGTAGTACATGCCTGTCTTAAGTCCACGTTTCCAAGCGTAAAAATGCATCGAGGT 28797 Query 78810 TAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAA 78869 |||||| ||| ||||| || ||||||| |||||| ||||| |||| ||| || Sbjct 28796 GAGTTTGCTCACACTTGGATCGGCAATATGGACATTCATCGATTGCGATTGACAGATAAA 28737 Query 78870 GGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTT 78929 || || | || ||||| | | || || ||||||| || |||||| | || || Sbjct 28736 TGCACCACGATCAGCAGCAAGATCTAAAATAATCTTTTGCTTAACTTCCCATACTGTCTT 28677 Query 78930 ATAAACTCGCTTAATATCTTCTGGAAGGTTTG-TA--TTCTGAATGGATCCACCATCTGC 78986 |||| || ||| || ||||| || || || |||| |||| ||| Sbjct 28676 GTAAATGTCTTTGATACGTTTTGGAATACTTAATACGTTTTGAACACTACCACGATCATG 28617 Query 78987 CATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAA---CTCTAAG 79043 | ||| ||| | || ||||||| | | | | || || || | | Sbjct 28616 TAAAATTTGATTACGTACTTCAGCATTCCAAAGA---CCCAAAGATATAAGTTCTTTCAT 28560 Query 79044 GAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACT 79103 | || || || | | |||||| |||| | || | |||| ||| || || Sbjct 28559 CAAATATTTGTTGACAATTGTAAATTCACCAGCAAGAACACGACGAGAGTACATGTTGGA 28500 Query 79104 GGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCAT 79163 ||| ||||||| | |||||||| || || | |||||| ||||| || || |||||||| Sbjct 28499 TGTAAATGGTTCAATTGATTCATTGTTGCCAAGAATTTGTGCAGTAGAAGCTGTTGGCAT 28440 Query 79164 AGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTG--ATTTTATCTTTTAGAGAT 79221 || || | ||| | | ||| | || ||| ||| | | | || | |||| || | Sbjct 28439 TGGGGCAAGCAAAAGAGAATTGCGAATACC--ATGCTTGGCCACTTGAGCTTTGAGTGTA 28382 Query 79222 TCCCAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTA 79281 |||| |||||||||| | || |||| ||| | ||||||||| | ||||| || Sbjct 28381 GCCCAGTCCCAAAGATTTGTTGGAGAAACACCCCACATATCATATTGGAAGATACCTTTG 28322 Query 79282 CTAGCGTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTC 79341 || | || |||| || ||||| || || || | || ||| | ||| Sbjct 28321 CTTACAGGAGAGCCTGCATACGTTTCGTATGGACCAAATTCTTTGGCAATTTCCATGGAT 28262 Query 79342 GCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGAT-CTTGTGCTTC 79400 | || | | | | | ||||| ||||| || || | ||||||| | |||| ||||| Sbjct 28261 GTTTCCATGGATGCATGGTAAATAGTTTCAAAGATTTGAATATTGAGTTTCTTG-GCTTC 28203 Query 79401 TAGGCTAT-CAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAA 79459 || || |||| |||||| | ||||||||| || || || | ||||||||||||| Sbjct 28202 -AGCAGATTCAAAAGGATAACCCATGAGAATAAAGGCATCAGCAAGCCCTTGAACACCAA 28144 Query 79460 TACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAA 79519 |||| ||||| | ||| | | |||| || ||||||| |||||| || || || | Sbjct 28143 TACCAATAGGACGATGACGCATATTGCTTCGTTTAGCTTCTTCAATAGGGTAGTAGTTGA 28084 Query 79520 TATCTATAATTTTATTGAGATTCCTGACTATTACTTT-GACCACATCCTTTAGTTTGAGA 79578 | || || | ||| || | ||| | || || | ||| | | | | | ||| | Sbjct 28083 TTTCAATCACTTTGTTTAAATTGC-GAGTAACAATTTTGGTGATTTTATGCAAATTGGTA 28025 Query 79579 AAATCAAATCGTCCATCTATTACAAACATGTTCAACGCGACA--GATGCCAGATTACAAA 79636 || |||||| ||||| | ||||| | || || | | | ||||||| ||| || | Sbjct 28024 AAGTCAAATACACCATCATTGACAAA--TTTTGAAAGAGCAATCGATGCCAAATTGCACA 27967 Query 79637 CGGCTACCTCAT--TAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTT 79694 | || || |||| | || | | ||||| || | |||| ||| | |||||| | || Sbjct 27966 CAGCCACTTCATCTTTGCTT--GTATATTCGATAACTTCACAGCACAAGTTACTCGATTT 27909 Query 79695 AATGGTTCCTAAATTTTGTTGATTACTCTTTTTG---TTACACGCATCCTTATAAAGAAT 79751 ||| || ||||| |||||||| || | |||| || || ||||| || || | || Sbjct 27908 AATAGTACCTAAGTTTTGTTGGTT---CGATTTGGAATTGCAAGCATCTTTGTACAACAT 27852 Query 79752 GAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTT 79811 | || ||||||||||| || ||||| || | ||| || ||| | ||||||| Sbjct 27851 ATATGGTGTACCAGTTTCGATTTGAGAATCGAGAATGGCAAACCATAATTGCTGAGCCTT 27792 Query 79812 TATTATAGACTTGTATCTCTT--TTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCG 79869 ||| | || | | | ||| ||| ||| || || || ||| || || Sbjct 27791 GATTGTCT--TTCGAGCACGACCTTCAGATTCAAATTTGGTGTACAAAGCTTCAAATTCC 27734 Query 79870 TCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGAC--CACTCTC 79927 | ||||| ||| | || |||| | ||| | || || | || ||| || || | Sbjct 27733 TTGCCCCAGCAATCTTGCAAGCCAGAAGCTTCATTTGGGCAAA--AAAGACTCCAATCAC 27676 Query 79928 CATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTC 79987 ||| | | || || |||||||| | |||||| ||||| | || ||| ||||| | Sbjct 27675 CATTTGCTTCGACACGCTTCATAAACAAATCAGGGATCCACAAGGCATAAAAGAGATCAC 27616 Query 79988 TGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAG 80047 | | || || || || ||| || || ||||| | ||| | | |||||||| Sbjct 27615 GAGCACGGTGTAGTTCATTGCCATGATTTTTCTTGAGATCCAAAAACTCAAAAATATCAG 27556 Query 80048 AATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTA 80107 |||||| ||||| | || ||||| | ||| || || || || || || | Sbjct 27555 CATGCCATGGTTCAAGATACATGGCAAACGAACCCTTACGCTTACCACCACCTTGGTCAA 27496 Query 80108 TGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCAT 80167 || | |||||| | ||| | |||| | ||| ||||| ||||| || |||| |||| Sbjct 27495 CATAGCGAGCGGTATCATTGAATACTCGAAGCATGGGAATGATACCGTTCGATGAGCCAT 27436 Query 80168 TGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCC 80227 |||| || ||||| || | | |||||||| || | || || || | Sbjct 27435 TGGTACCACGAATATAACTATTTGTTGAGCGAATATTGTGGATATTCACGCCGATACCAC 27376 Query 80228 CTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTAT 80287 | ||| ||| || || | || ||| |||| || |||||||| || || || || || Sbjct 27375 CAGCCCATTTGGAAATACAAGCACATTGTTTCAAAGTATCATAAATACCTTCAATCGAAT 27316 Query 80288 CATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAA 80347 | || ||||| | ||||| || |||| ||| |||| ||| || ||||| | Sbjct 27315 CGTCCTTCATGGCCAAAAGAAAGCAAGACGACAATTGTGGACGTGGAGTACCAGCATTGA 27256 Query 80348 ATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG-TACGTCTCAATA 80406 | | ||||| | ||| || || || | ||| | || | ||| || || || | | Sbjct 27255 AAAGAGTAGGTGTAGCATGGGTGAAGAACATTTGACTCA-TGTATTCATAAGTGTCCAAA 27197 Query 80407 GCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGT 80466 ||| | ||||| || |||||| || || || |||||||| | ||||||||||||| Sbjct 27196 GCTCCAGCAATATCTTCTTTATGAATACCAACAGCAACACGCATGATCATGTGCTGAGGT 27137 Query 80467 CTTTCAACGATCTTGTT-ATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACC 80525 | |||| | | ||| | ||||| || | ||| || ||||||||||||||||| || Sbjct 27136 CGTTCA-CAAACTTTTCCATTTACTTGAAGCAAATAGCTCTTTTCCAAAGTTTTAAATCC 27078 Query 80526 AAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 ||| || | ||| ||| || || || ||||||| Sbjct 27077 AAAGTAATCATATTCAAAATCACGATCAGAAATAAT 27042 >seq2584 Length=5567 Score = 242 bits (268), Expect = 5e-59 Identities = 424/610 (70%), Gaps = 13/610 (2%) Strand=Plus/Plus Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 |||| | || || || || || || |||||||| || | | ||| |||||||| |||| Sbjct 3227 ACATGAGGCAGGCAAAGTCACAATGAAGACCCTCATCACGAGAAATAAGTTCGTTCGAAA 3286 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAG 50071 | | | || ||||| | ||||| || || |||||||| || || |||||| || | Sbjct 3287 AGCTTAAACCAGGCATCAAACCACGTTTCTTGAGCCAAAAGATCGAGCAAAATGATCCTG 3346 Query 50072 AAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGT 50131 ||||||| || ||||| || || |||||||| |||| | ||| |||| || | | Sbjct 3347 AAAAGAAAATACCTTCAACAGCAGCAAAGGCTACAATACGTTCTGCATACGCAGCAATTT 3406 Query 50132 ---CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 50188 ||| ||| || ||||||| | || || || ||||||||| ||||| || | Sbjct 3407 TGCCATTGCACCATTTAAGAGCCCATTTAGCTTTACGTTGTACACAAGGAATCGTATCAA 3466 Query 50189 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCA--AAAG 50246 | || | || | | | |||||| | | || || | ||||||||| || | || | Sbjct 3467 TAGCCCTCAAAACACGATCTTTTTCCACAATGTCCTTGATATAAGTATCAATGAGCAACG 3526 Query 50247 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGC 50306 | || || ||| |||||||| ||||| || || || |||||||| || ||||||||||| Sbjct 3527 AATAAAC--TTCTGAATGAATATTTTCGATAGCAATTTGAAATCCATAAAAACATCTAGC 3584 Query 50307 CTC-GGTAATCTGCACTTCTGTACAAAATCGTTCA--GCTAAATTTTCATTCACTATTCC 50363 || |||| | || ||||| | |||| |||| || ||||||||||| || || || Sbjct 3585 TTCAGGTACT-TGTACTTCATTGGAAAAA--TTCATGGCCAAATTTTCATTTACAATACC 3641 Query 50364 GTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAG 50423 || ||||||||||| ||||||||||| | ||||| | ||| ||| || || Sbjct 3642 ATCCGATGCTGCAAAAAATGCCAATACATGGGTAATAAAGAATCGTTCATTGTCCGTAAG 3701 Query 50424 TTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGC 50483 ||| ||||||| || ||||| | | ||||| |||||| | |||||||| || Sbjct 3702 TTTTGTCCAATCTTTCATATCATGGACAAGATCTAATTCTTCTGCAGTCCAAAAACTAGC 3761 Query 50484 CTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCT 50543 || || || |||||||| | ||| | || | ||| || || |||| ||||||| Sbjct 3762 TTCAGCTTTCTTATACATTTCCCACACATCTGTGTGTTGAATAGGAAAAAGCACAAATCG 3821 Query 50544 ATTTGGATTT 50553 |||||| ||| Sbjct 3822 ATTTGGGTTT 3831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718220918406120