Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq2584 320 2e-82 >seq2584 Length=5567 Score = 320 bits (354), Expect = 2e-82 Identities = 611/884 (69%), Gaps = 26/884 (3%) Strand=Plus/Plus Query 13587 TATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATA 13646 ||||||| || | ||||| || ||||| || || |||| || ||||| | ||||| Sbjct 2950 TATTCACCGACACGCTTTTCGAAAAAGTTGGTCTTTCCTTGAAGAGATATCATGTCCATC 3009 Query 13647 AAATCAAATGGATTTATTGACATA--AACACTTTATCACAACCTAGTTCTAATAGTAATC 13704 | || |||||||| ||| ||| || ||| | | || || || || | | Sbjct 3010 CAGTCGAATGGATTC-TTGGCATTGTAAAGCTTGGTAGCT-CCAAGGGCTTGGAGAAGGC 3067 Query 13705 TATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTA 13764 ||||||| || ||||| |||| |||| | | | |||||||| || |||| || Sbjct 3068 GATCAGCACAGAATTCAATGTATTCGCACATGAGAGATGAGTTCATACCAATGAGTTCTA 3127 Query 13765 CAGGAATTATATTG-GTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATT 13823 | |||| | ||| | | ||||| ||||| || | ||||| || ||||| Sbjct 3128 CTGGAAG-AGATTCCGAGACAAATTGCTTTTCAATTGCAACAGCATCCCCAATAATTTCA 3186 Query 13824 GTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAA--TTAAACACGCAAAAT 13881 |||| || |||||| || | || || || || | | | || ||||| | Sbjct 3187 TGAATACGTTCGTTAGAA--AGCTTGTTGATGAGCTTGGAATACATGAGGCAGGCAAAGT 3244 Query 13882 CACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCA 13941 |||||||||| |||||||| | | |||||||||||| ||||| |||| || ||||||| Sbjct 3245 CACAATGAAGACCCTCATCACGAGAAATAAGTTCGTTCGAAAAGCTTAAACCAGGCATCA 3304 Query 13942 ATCCTCGtttttttAACCAAAATATTGCAGCAAA-TGACCCGGAAAAGAATATTCCCTCA 14000 | || ||||| || | |||||| || | |||||| ||| || |||||||| || || ||| Sbjct 3305 AACCACGTTTCTTGAGCCAAAAGATCG-AGCAAAATGATCCTGAAAAGAAAATACCTTCA 3363 Query 14001 ACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATC--CATT 14058 || |||||||| |||| | |||||| || ||| || ||||| | || | |||| Sbjct 3364 ACAGCAGCAAAGGCTACAATACGTTCTGCATACGCAGCAATTTTG--CCATTGCACCATT 3421 Query 14059 TTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAAT 14118 | |||||||| || ||| || | | || || || |||||||| | || | | Sbjct 3422 TAAGAGCCCATTTAGCTTTACGTTGTACACAAGGAATCGTATCAATAGCCCTCAAAACAC 3481 Query 14119 ATTCCTTCTCTTTA--GTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGA 14176 || || || | || ||||| || | |||||||| || || ||| | ||| || Sbjct 3482 GATCTTTTTCCACAATGTCCTTGATAT--AAGTATCAATGAGCAACGAATAAACTTCTGA 3539 Query 14177 GTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTAC 14236 || || ||||| ||||| || ||||| |||||||| ||||||||||| | |||||| Sbjct 3540 ATGAATATTTTCGATAGCAATTTGAAATCCATAAAAACATCTAGCTTCAGGTACTTGTAC 3599 Query 14237 TTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAA 14296 ||| | |||| | ||||||||||||||| || |||||||| ||||||||||| Sbjct 3600 TTCATTGGAAAAATTCATGGCCAAATTTTCATTTACAATACCATCCGATGCTGCAAAAAA 3659 Query 14297 TGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGT---TGAGTTTTTTCCAATCGGA 14353 |||||||| | |||||||| || | |||||||| | |||||| ||||||| Sbjct 3660 TGCCAATACATGGGTAATAAAGAATCG---TTCATTGTCCGTAAGTTTTGTCCAATCTTT 3716 Query 14354 TAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATA 14413 | ||| | |||||||| ||| || | |||||||||||||| ||||||| ||||| Sbjct 3717 CATATCATGGACAAGATCTAATTCTTCTGCAGTCCAAAAACTAGCTTCAGCTTTCTTATA 3776 Query 14414 CATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATC 14457 |||| |||| | ||| | | | |||||||||| ||||||| Sbjct 3777 CATTTCCCACACATCTGTGTGTTGAATAGGAAAAAGCACAAATC 3820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479696020132200