Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq580 95.1 9e-15 seq2232 91.5 1e-13 seq419 86.0 5e-12 >seq580 Length=37562 Score = 95.1 bits (104), Expect = 9e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 42898 AACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCG 42957 |||||||| || | || |||||||| | |||||| || | |||||| | || Sbjct 8510 AACACCAAGTGCAAGGTCGATTCCTTTTGGATATTGTAGTCACTAAGAGTACGTCCATCT 8569 Query 42958 TCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCG 43017 |||||||||||||| ||||| ||||| || |||||||| | || | |||||| || || Sbjct 8570 TCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTGTCT 8629 Query 43018 CTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTT 43077 || | ||||| | ||| | ||| || || ||||| | ||| || || Sbjct 8630 TGAATTTTTTGCTTGACGTTATCAATCGAGTCCGAAGGTTCCACGTCCAACGTAATTGTC 8689 Query 43078 TTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||||||| || || || ||||| |||||||| Sbjct 8690 TTTCCGGTGAGTGTCTTGACAAAGATTTGCAT 8721 >seq2232 Length=15861 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | ||||| || | ||| |||||||| | ||||||||| | Sbjct 622 CCACCACGAAGACGAAGGACCAAGTGCAAAGTCGATTCCTTTTGAATGTTGTAATCGCTC 563 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || ||||| | || || | ||| ||||||||||| ||||| || |||||||| | || Sbjct 562 AAAGTACGACCATCTTCGAGTTGCTTGCCGGCAAAGATCAAACGTTGTTGATCTGGAGGA 503 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||| || || |||| | ||||| || ||| | ||| || ||| || Sbjct 502 ATACCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCAATCGAGTCCGAAGGCTCTACA 443 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | ||| || || || || || | || || || ||||| ||||| || Sbjct 442 TCCAACGTGATGGTCTTGCCAGTCAATGTCTTGACGAAAATCTGCATATT 393 >seq419 Length=23932 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | || |||||||| | || |||||||| | ||||| ||| Sbjct 23512 CCACCACGAAGACGCAAGACCAAATGCAATGTAGATTCCTTTTGGATGTTGTAGTCGCTT 23453 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || ||||| | || || | |||||| ||||||||||| | || |||||||| | || Sbjct 23452 AAAGTACGGCCATCTTCGAGTTGTTTACCGGCAAAAATGAGGCGTTGTTGATCTGGAGGA 23393 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || |||| | ||| || | ||| | ||| || |||||| Sbjct 23392 ATGCCTTCCTTGTCTTGGATCTTTTGTTTAACATTATCAATGGAGTCCGAAGGTTCGACG 23333 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || || ||||| | || || |||||||||||||| Sbjct 23332 TCAAGTGTGATCGTCTTACCGGTCAACGTCTTTACAAAAATTTGCAT 23286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381344812525314