Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2584 259 6e-64 seq224 253 3e-62 >seq2584 Length=5567 Score = 259 bits (286), Expect = 6e-64 Identities = 428/612 (70%), Gaps = 17/612 (3%) Strand=Plus/Plus Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 |||| | || || || || || || ||||||||||| | | ||| | |||||| |||| Sbjct 3227 ACATGAGGCAGGCAAAGTCACAATGAAGACCCTCATCACGAGAAATAAGTTCGTTCGAAA 3286 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAG 42176 | | | || ||||| | ||||| || || |||||||| || || ||||||||| | Sbjct 3287 AGCTTAAACCAGGCATCAAACCACGTTTCTTGAGCCAAAAGATCGAGCAAAATGATCCTG 3346 Query 42177 AAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGT 42236 ||||||| || ||||| || || |||||||| | || | ||| |||| | ||| | | Sbjct 3347 AAAAGAAAATACCTTCAACAGCAGCAAAGGCTACAATACGTTCTGCATACGCAGCAATTT 3406 Query 42237 ---CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 42293 ||| ||| || ||||||| | || || || ||||||||| ||||| || | Sbjct 3407 TGCCATTGCACCATTTAAGAGCCCATTTAGCTTTACGTTGTACACAAGGAATCGTATCAA 3466 Query 42294 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCA--AAAG 42351 | || | || | | | |||||| | | || || | ||| ||||| || | || | Sbjct 3467 TAGCCCTCAAAACACGATCTTTTTCCACAATGTCCTTGATATAAGTATCAATGAGCAACG 3526 Query 42352 ACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGC 42411 | || || |||||||||||| ||||| || || || |||||||| || |||||||| || Sbjct 3527 AATAAAC--TTCTGAATGAATATTTTCGATAGCAATTTGAAATCCATAAAAACATCTAGC 3584 Query 42412 CTCGGTAACCTGTACTTCTGTACAAAATCGTTCA--GCTAAATTTTCGTTCACTATTCCG 42469 || | || |||||||| | |||| |||| || |||||||| || || || || Sbjct 3585 TTCAGGTACTTGTACTTCATTGGAAAAA--TTCATGGCCAAATTTTCATTTACAATACCA 3642 Query 42470 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTC---GTCCGGTGTT 42526 || ||||||||||| ||||||||||| | ||||| || ||| |||| || Sbjct 3643 TCCGATGCTGCAAAAAATGCCAATACATGGGTAATAAAGAATCGTTCATTGTCC---GTA 3699 Query 42527 AATTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGAT 42586 | ||| ||||||| || ||||| | | ||||| ||||||| | |||||||| Sbjct 3700 AGTTTTGTCCAATCTTTCATATCATGGACAAGATCTAATTCTTCTGCAGTCCAAAAACTA 3759 Query 42587 GCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAAT 42646 ||||| || || |||||||| | ||| | ||| | |||||| || |||| |||||| Sbjct 3760 GCTTCAGCTTTCTTATACATTTCCCACACATCTGTGTGTTGAATAGGAAAAAGCACAAAT 3819 Query 42647 CTATTTGGATTT 42658 | |||||| ||| Sbjct 3820 CGATTTGGGTTT 3831 >seq224 Length=84125 Score = 253 bits (280), Expect = 3e-62 Identities = 1170/1834 (64%), Gaps = 41/1834 (2%) Strand=Plus/Minus Query 70833 ACGTAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGT 70892 |||||| |||||||||||||| || || || | |||| ||||||||||||| || Sbjct 28856 ACGTAGGTAGTACATGCCTGTCTTAAGTCCACGTTTCCAAGCGTAAAAATGCATCGAGGT 28797 Query 70893 TAGTTTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAA 70952 |||||| || |||||||| || || | ||||||||| || |||| ||| || Sbjct 28796 GAGTTTGCTCACACTTGGATCGGCAATATGGACATTCATCGATTGCGATTGACAGATAAA 28737 Query 70953 GGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTT 71012 || || | || ||||| | | || || ||||||| || |||||| | || || Sbjct 28736 TGCACCACGATCAGCAGCAAGATCTAAAATAATCTTTTGCTTAACTTCCCATACTGTCTT 28677 Query 71013 ATAAACTCGCTTAATATCTTCTGGAAGGTTTG-TA--TTCTGAATGGATCCACCATC-TG 71068 |||| || ||| || ||||| || || || |||| |||| ||| || Sbjct 28676 GTAAATGTCTTTGATACGTTTTGGAATACTTAATACGTTTTGAACACTACCACGATCATG 28617 Query 71069 CAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAA---CTCTAA 71125 || ||| ||| | || ||||||| | | | | || || || | | Sbjct 28616 TAA-AATTTGATTACGTACTTCAGCATTCCAAAGA---CCCAAAGATATAAGTTCTTTCA 28561 Query 71126 GGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTAC 71185 | || || || | | |||||| |||| | || | ||||| ||| || || Sbjct 28560 TCAAATATTTGTTGACAATTGTAAATTCACCAGCAAGAACACGACGAGAGTACATGTTGG 28501 Query 71186 TGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCA 71245 ||| | ||||| | ||| ||||| || || | |||||| ||||| || || || |||| Sbjct 28500 ATGTAAATGGTTCAATTGATTCATTGTTGCCAAGAATTTGTGCAGTAGAAGCTGTTGGCA 28441 Query 71246 TAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGG--ATTTTATCTTTTAGAGA 71303 | || || | ||| ||| ||| | || |||||| | || | || | |||| || | Sbjct 28440 TTGGGGCAAGCAAAAGAGAATTGCGAATACCATGC--TTGGCCACTTGAGCTTTGAGTGT 28383 Query 71304 TTCCCAATTCCAAAGATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTT 71363 |||| | |||||||| | ||| ||| || || || Sbjct 28382 AGCCCAGTCCCAAAGATTTGTTGGAGAAACACCCCACATATCATATTGGAAGATACCTTT 28323 Query 71364 ACTAGCGTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACT 71423 || | || |||||||| || |||||||| || || || ||| | ||| Sbjct 28322 GCTTACAGGAGAGCCTGCATACGTTTCGTATGGACCAAATTCTTTGGCAATTTCCATGGA 28263 Query 71424 CGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGAT-CTTGTGCTT 71482 | || | | | ||| ||||| ||||| || || | ||||||| | |||| |||| Sbjct 28262 TGTTTCCATGGATGCATGGTAAATAGTTTCAAAGATTTGAATATTGAGTTTCTTG-GCTT 28204 Query 71483 CCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAA 71542 | | ||||| |||||| | ||||||||| || || || | |||||||| |||| Sbjct 28203 CAGCAGATTCAAAAGGATAACCCATGAGAATAAAGGCATCAGCAAGCCCTTGAACACCAA 28144 Query 71543 TACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAA 71602 |||| ||||| | || | | |||| || ||||||| |||||| || || || | Sbjct 28143 TACCAATAGGACGATGACGCATATTGCTTCGTTTAGCTTCTTCAATAGGGTAGTAGTTGA 28084 Query 71603 TATCTATAATTTTATTGAGATTTCTGACTATTACTTT-GACCACATCCTTTAGTTTGAGA 71661 | || || | ||| || | ||| | || || | ||| | | | | | ||| | Sbjct 28083 TTTCAATCACTTTGTTTAAATTGC-GAGTAACAATTTTGGTGATTTTATGCAAATTGGTA 28025 Query 71662 AAATCAAATCTCCCATCTATTACAAACACGTTCAAG-GCAACAGATGCCAGATTACAAAC 71720 || |||||| ||||| | ||||| | ||| |||| ||||||| ||| || || Sbjct 28024 AAGTCAAATACACCATCATTGACAAATTT-TGAAAGAGCAATCGATGCCAAATTGCACAC 27966 Query 71721 GGCTACCTCAT--TAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTG 71778 || || |||| | || | | ||||| |||| |||| ||| | ||||| | || Sbjct 27965 AGCCACTTCATCTTTGCTT--GTATATTCGATAACTTCACAGCACAAGTTACTCGATTTA 27908 Query 71779 ATGGTTCCTAAATTTTGTTGATTACTCTTTTTG---TTACACGCATCCTTATAAAGAATA 71835 || || ||||| |||||||| || | |||| || || ||||| || || | ||| Sbjct 27907 ATAGTACCTAAGTTTTGTTGGTT---CGATTTGGAATTGCAAGCATCTTTGTACAACATA 27851 Query 71836 AACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTT 71895 | || ||||||||||| || ||||| || | ||| || ||| | ||||||| Sbjct 27850 TATGGTGTACCAGTTTCGATTTGAGAATCGAGAATGGCAAACCATAATTGCTGAGCCTTG 27791 Query 71896 ATTATATT-CTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTC 71954 ||| | || | | | | || | ||| ||| || || || ||| || || | Sbjct 27790 ATTGTCTTTCGAGCACGACCTT-CAGATTCAAATTTGGTGTACAAAGCTTCAAATTCCTT 27732 Query 71955 TCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGAC--CACTCTCCA 72012 ||||| || | || |||| | |||||| || || | || ||| || || ||| Sbjct 27731 GCCCCAGCAATCTTGCAAGCCAGAAGCTTCATTTGGGCAAA--AAAGACTCCAATCACCA 27674 Query 72013 TCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTG 72072 | | | || || |||||||| | |||||| ||||| | || ||| ||||| | Sbjct 27673 TTTGCTTCGACACGCTTCATAAACAAATCAGGGATCCACAAGGCATAAAAGAGATCACGA 27614 Query 72073 GTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAA 72132 | | || || || || ||| || || ||||| | ||| | | |||||||| | Sbjct 27613 GCACGGTGTAGTTCATTGCCATGATTTTTCTTGAGATCCAAAAACTCAAAAATATCAGCA 27554 Query 72133 TGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATG 72192 ||||| ||||| | || ||||| | ||| || || || || || || | Sbjct 27553 TGCCATGGTTCAAGATACATGGCAAACGAACCCTTACGCTTACCACCACCTTGGTCAACA 27494 Query 72193 TATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTG 72252 || | |||||| | ||| | |||| | ||| ||||| ||||| || |||| |||||| Sbjct 27493 TAGCGAGCGGTATCATTGAATACTCGAAGCATGGGAATGATACCGTTCGATGAGCCATTG 27434 Query 72253 GTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCT 72312 || || ||||| || | | ||||||||| || | || || || || Sbjct 27433 GTACCACGAATATAACTATTTGTTGAGCGAATATTGTGGATATTCACGCCGATACCACCA 27374 Query 72313 GCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCA 72372 ||| ||| || || | || ||| |||| || |||||||| || || || || ||| Sbjct 27373 GCCCATTTGGAAATACAAGCACATTGTTTCAAAGTATCATAAATACCTTCAATCGAATCG 27314 Query 72373 TCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAAT 72432 ||| ||||| | ||||| || |||| ||| |||| ||| || ||||| || Sbjct 27313 TCCTTCATGGCCAAAAGAAAGCAAGACGACAATTGTGGACGTGGAGTACCAGCATTGAAA 27254 Query 72433 AAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG-TACGTCTCAATAGC 72491 | ||||| | ||| || || || | ||| | || | ||| || || || | ||| Sbjct 27253 AGAGTAGGTGTAGCATGGGTGAAGAACATTTGACTCA-TGTATTCATAAGTGTCCAAAGC 27195 Query 72492 TGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCT 72551 | | ||||| || ||| || || || || |||||||| | ||| |||||||||| Sbjct 27194 TCCAGCAATATCTTCTTTATGAATACCAACAGCAACACGCATGATCATGTGCTGAGGTCG 27135 Query 72552 TTCAACGATCTTGTT-ATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAA 72610 |||| | | ||| | ||||| || | ||| ||| ||||||||||||||||| |||| Sbjct 27134 TTCA-CAAACTTTTCCATTTACTTGAAGCAAATAGCTCTTTTCCAAAGTTTTAAATCCAA 27076 Query 72611 AATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 | || | ||| ||| || || || ||||||| Sbjct 27075 AGTAATCATATTCAAAATCACGATCAGAAATAAT 27042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671094460183080