Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq419 163 3e-35 seq580 158 1e-33 seq5008 156 4e-33 seq2092 140 3e-28 seq2232 138 1e-27 >seq419 Length=23932 Score = 163 bits (180), Expect = 3e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || ||||| | || ||||| | ||||||||| ||||| || ||||| ||||| Sbjct 23285 GCCACCACGCAAACGGAGGACCAAATGCAATGTAGATTCCTTTTGGATATTGTAGTCGCT 23226 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || || | ||||||||| |||||||||||| |||| |||||||| ||||| ||||| Sbjct 23225 CAAAGTTCGTCCGTCTTCGAGCTGTTTACCAGCAAAGATAAGACGTTGTTGATCTGGAGG 23166 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 |||||||| || || ||| |||||||| | | || | | ||||| ||||| || Sbjct 23165 AATGCCTTCCTTATCTTGAATCTTTTGTTTCACGTTGTCGATGGAGTCCGATGGTTCGAC 23106 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || | |||||| |||||||| || || || || |||||||| Sbjct 23105 GTCAAGTGTGATCGTCTTACCGGTCAAAGTCTTAACAAAGATTTGCAT 23058 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | |||||| || ||||| | ||||||||| ||||| |||||||| ||||| Sbjct 23512 CCACCACGAAGACGCAAGACCAAATGCAATGTAGATTCCTTTTGGATGTTGTAGTCGCTT 23453 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||||||||||||||||| ||| | || || ||||| ||||| ||||| Sbjct 23452 AAAGTACGGCCATCTTCGAGTTGTTTACCGGCAAAAATGAGGCGTTGTTGATCTGGAGGA 23393 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||| ||||| || |||||||| | | || | | ||||| ||||| || Sbjct 23392 ATGCCTTCCTTGTCTTGGATCTTTTGTTTAACATTATCAATGGAGTCCGAAGGTTCGACG 23333 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || | |||||| |||||||| || ||||| || |||||||| Sbjct 23332 TCAAGTGTGATCGTCTTACCGGTCAACGTCTTTACAAAAATTTGCAT 23286 Score = 138 bits (152), Expect = 1e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || ||||| | || || |||| || ||||| ||||| |||||||| || || Sbjct 23741 GCCACCACGCAAACGAAGGACCAAGTGAAGAGTCGATTCCTTTTGGATGTTGTAGTCACT 23682 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | |||| ||||| ||||||||||||||| | || || ||||| ||||| ||||| Sbjct 23681 AAGGGTGCGGCCATCTTCAAGTTGTTTACCAGCAAAAATGAGGCGTTGTTGATCTGGAGG 23622 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 |||||||| ||||| ||| ||||| || | | || | | |||| ||||| || Sbjct 23621 AATGCCTTCCTTGTCTTGAATCTTTTGCTTGACGTTGTCAATGGAATCCGATGGTTCGAC 23562 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | ||||| || |||||||| || ||||| ||||||||| Sbjct 23561 ATCGAGAGTAATGGTCTTACCCGTCAATGTCTTCACGAAGATTTGCATA 23513 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || ||||| | ||| ||||| | ||| ||||| ||||| || ||||||||||| Sbjct 23057 GCCACCACGCAAACGAAGAACCAAATGCAATGTGGATTCCTTTTGGATATTGTAATCGCT 22998 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || || | ||||||||||| || |||||| |||| |||||||| ||||| ||||| Sbjct 22997 CAGGGTACGACCATCTTCGAGTTGCTTGCCAGCAAAGATAAGACGTTGTTGATCTGGAGG 22938 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 |||||||| || || ||| ||||| || | | || | | ||||| || || || Sbjct 22937 AATGCCTTCCTTATCTTGAATCTTTTGCTTGACGTTGTCAATGGAGTCCGATGGCTCAAC 22878 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||| || || | ||| || || || |||||||| Sbjct 22877 ATCGAGCGTGATTGTCTTCCCCGTGAGTGTCTTGACAAAGATTTGCAT 22830 Score = 102 bits (112), Expect = 8e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 142994 TCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAG 143053 || ||||| |||||||| ||||| | |||| ||||||||||| || || ||| || Sbjct 23932 TCCTTTTGGATGTTGTAGTCGCTGAGAGTGCGGCCATCTTCGAGTTGCTTGCCGGCAAAG 23873 Query 143054 ATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGT 143113 || |||||||| ||||| || || |||||||| ||||| || ||||| || | | Sbjct 23872 ATGAGACGTTGTTGATCAGGTGGAATGCCTTCCTTGTCTTGGATCTTTTGCTTGACATTG 23813 Query 143114 TCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACG 143173 || | | |||| ||||| || || | || | || || || |||||||| || || Sbjct 23812 TCAATAGAATCCGAAGGTTCGACATCGAGGGTAATGGTTTTACCCGTCAATGTCTTGACA 23753 Query 143174 AATATTTGCAT 143184 || |||||||| Sbjct 23752 AAGATTTGCAT 23742 >seq580 Length=37562 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || ||||| | || ||||||| ||| ||||| ||||| ||||||||||| || Sbjct 8267 CCACCACGCAAACGTAGGACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCACTG 8326 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| |||||||||||||| |||||| | |||| |||||||| || || || Sbjct 8327 AGAGTGCGGCCATCTTCGAGTTGTTTGCCAGCAAAAATCAATCGTTGCTGGTCTGGTGGG 8386 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||| || || || |||||||||| | || | || ||||| ||||| || Sbjct 8387 ATGCCTTCCTTATCTTGGATCTTTTGTTTTACGTTATCAATCGAGTCCGAAGGTTCGACA 8446 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | |||||||||||||| || |||||||| |||||||| Sbjct 8447 TCCAATGTAATTGTCTTGCCGGTCAACGTCTTTACGAAAATTTGCAT 8493 Score = 152 bits (168), Expect = 5e-32 Identities = 173/230 (75%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || ||||||||||| |||| ||| | |||||||| || || |||||||| || || Sbjct 8039 CCACCACGTAAACGCAAGACTAGATGTAGAGTAGATTCCTTCTGAATGTTGTAGTCACTG 8098 Query 143018 ATTGTGCTCGAG--TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 | | | ||| |||||||||||||| |||||| | || | |||||| ||||| |||| Sbjct 8099 A--GAGAACGACCATCTTCGAGTTGTTTGCCAGCAAAAATTAAACGTTGTTGATCTGGAG 8156 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 | |||||||||||||| ||| |||||||| | | || | | ||| | ||||| | Sbjct 8157 GGATGCCTTCTTTGTCTTGAATCTTTTGTTTCACATTATCAATTGAGTCTGAAGGTTCCA 8216 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 | |||| || | ||||| || |||||||| || ||||| ||||||||| Sbjct 8217 CGTCAAGTGTAATAGTCTTTCCAGTCAATGTCTTGACGAAAATTTGCATA 8266 Score = 140 bits (154), Expect = 3e-28 Identities = 172/234 (74%), Gaps = 1/234 (0%) Strand=Plus/Plus Query 142952 ACATGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAA 143011 ||||| ||||| || | |||||| || || || | |||||||| ||||| |||||||| Sbjct 7806 ACATG-CCTCCACGAAGACGCAATACCAAGTGGAGAGTAGATTCCTTTTGAATGTTGTAG 7864 Query 143012 TCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCG 143071 || || | ||| | |||||| |||||||||||||| | |||| |||||| ||||| Sbjct 7865 TCACTTAATGTACGACCGTCTTCAAGTTGTTTACCAGCGAAAATCAAACGTTGTTGATCC 7924 Query 143072 GGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGT 143131 ||||| |||||||| ||||| || ||||| || | | || | || ||| | ||| Sbjct 7925 GGAGGGATGCCTTCCTTGTCTTGGATCTTTTGCTTGACATTATCAATCGAGTCGGATGGT 7984 Query 143132 TCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || || || | || | || || || ||||| ||||| || || ||||||||| Sbjct 7985 TCAACATCCAAGGTAATGGTTTTTCCCGTCAAAGTTTTGACAAAGATTTGCATA 8038 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||||||||||||| || || || | || ||||| ||||| || ||||| || || Sbjct 8495 CCGCCTCGTAAACGCAACACCAAGTGCAAGGTCGATTCCTTTTGGATATTGTAGTCACTA 8554 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | || | ||||| | |||||| |||||| |||||| |||||| ||||| ||||| Sbjct 8555 AGAGTACGTCCA-TCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGAGG 8613 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| ||||| ||||||||| || | | || | || ||||| ||||| || Sbjct 8614 AATACCTTCCTTGTCTTGAATTTTTTGCTTGACGTTATCAATCGAGTCCGAAGGTTCCAC 8673 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||| ||||| | ||| || || || |||||||| Sbjct 8674 GTCCAACGTAATTGTCTTTCCGGTGAGTGTCTTGACAAAGATTTGCAT 8721 >seq5008 Length=14815 Score = 156 bits (172), Expect = 4e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || ||||||| |||||||||||||| ||||||||||||||| Sbjct 6448 CCACCACGAAGACGAAGGACCAAATGAAGAGTAGATTCTTTTTGGATGTTGTAATCGCTC 6389 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | || | ||||| |||||||| || ||| |||||| |||||| ||||| ||||| Sbjct 6388 AAAGTACGTCCA-TCTTCAAGTTGTTTGCCTGCAAAGATCAAACGTTGTTGATCTGGAGG 6330 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 |||||||| ||||| ||| ||||| || | | || | || |||| ||||| || Sbjct 6329 AATGCCTTCCTTGTCTTGAATCTTTTGCTTGACATTATCAATCGAATCCGAAGGTTCGAC 6270 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | |||||||| |||||||| || ||||| || ||||| Sbjct 6269 ATCCAACGTGATGGTCTTGCCTGTCAATGTCTTGACGAAGATCTGCAT 6222 >seq2092 Length=13256 Score = 140 bits (154), Expect = 3e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || ||||| ||||| |||||||||||||||| |||| ||||||||||| || || Sbjct 11891 GTCGATTCCTTTTGGATGTTGTAATCGCTCAAAGTGCGACCATCTTCGAGTTGCTTGCCG 11832 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| |||||| |||||| ||||| ||||| |||||||| ||||| ||||||||| || Sbjct 11831 GCAAAGATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTTGTCTTGAATTTTTTGCTTG 11772 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | || |||| ||||| || || | || | ||||| || ||||| || Sbjct 11771 ACATTATCAATCGAATCCGAAGGTTCGACATCCAATGTGATGGTCTTACCCGTCAAGGTC 11712 Query 143168 TTTACGAATATTTGCAT 143184 |||||||| || ||||| Sbjct 11711 TTTACGAAGATCTGCAT 11695 >seq2232 Length=15861 Score = 138 bits (152), Expect = 1e-27 Identities = 163/220 (74%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || ||||| ||||| |||||||||||||||| || | ||||||||||| || || Sbjct 592 GTCGATTCCTTTTGAATGTTGTAATCGCTCAAAGTACGACCATCTTCGAGTTGCTTGCCG 533 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| |||||| |||||| ||||| ||||| || ||||| ||||| || ||||| || Sbjct 532 GCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTGTCCTGGATCTTTTGCTTG 473 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | || ||||| || ||||| || | || | |||||||| |||||||| Sbjct 472 ACGTTGTCAATCGAGTCCGAAGGCTCTACATCCAACGTGATGGTCTTGCCAGTCAATGTC 413 Query 143168 TTTACGAATATTTGCATAGCTTATGTTTTACCTTCCTCTT 143207 || ||||| || |||||| || || ||||||| |||| Sbjct 412 TTGACGAAAATCTGCATA--TTGCTTTCTACCTTCTTCTT 375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506980601152560