Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq580 123 2e-23 seq5008 120 2e-22 seq2092 107 1e-18 seq419 105 5e-18 seq2232 91.5 1e-13 >seq580 Length=37562 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || || || || || || || ||||| |||||||| || |||| | | ||||| Sbjct 7826 AATACCAAGTGGAGAGTAGATTCCTTTTGAATGTTGTAGTCACTTAATGTACGACCGTCT 7885 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | |||||| |||||| | |||||||||||||| || || || ||||| ||||| Sbjct 7886 TCAAGTTGTTTACCAGCGAAAATCAAACGTTGTTGATCCGGAGGGATGCCTTCCTTGTCT 7945 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 || || ||| ||| | || || | ||| ||| ||||| |||||||||||| Sbjct 7946 TGGATCTTTTGCTTGACATTATCAATCGAGTCGGATGGTTCAACATCCAAGGTAATGGTT 8005 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || |||| |||||| ||||| ||||||||| Sbjct 8006 TTTCCCGTCAAAGTTTTGACAAAGATTTGCATA 8038 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | ||| | || || |||||||| ||||| || ||||| ||||||||||| || Sbjct 8267 CCACCACGCAAACGTAGGACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCACTG 8326 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | ||||| | |||||||||||| | ||||| ||||| ||||| ||| Sbjct 8327 AGAGTGCGGCCATCTTCGAGTTGTTTGCCAGCAAAAATCAATCGTTGCTGGTCTGGTGGG 8386 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| || || || || ||||| | || || | || | ||| ||| Sbjct 8387 ATGCCTTCCTTATCTTGGATCTTTTGTTTTACGTTATCAATCGAGTCCGAAGGTTCGACA 8446 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || ||||| || || || |||| || ||||| ||||||||||| Sbjct 8447 TCCAATGTAATTGTCTTGCCGGTCAACGTCTTTACGAAAATTTGCAT 8493 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || || || | ||| || || ||||| || ||||| || || ||| | | | ||| Sbjct 8510 AACACCAAGTGCAAGGTCGATTCCTTTTGGATATTGTAGTCACTAAGAGTACGTCCATCT 8569 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || |||||||||||||| | |||||||||||||| || ||||| ||||| ||||| Sbjct 8570 TCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTGTCT 8629 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 |||||| ||| || | || || | || | ||| || || || ||||| || Sbjct 8630 TGAATTTTTTGCTTGACGTTATCAATCGAGTCCGAAGGTTCCACGTCCAACGTAATTGTC 8689 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || || || ||||| |||||||| Sbjct 8690 TTTCCGGTGAGTGTCTTGACAAAGATTTGCAT 8721 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || |||| ||| || || || || || || |||||||| || || ||| | | ||| Sbjct 8054 AAGACTAGATGTAGAGTAGATTCCTTCTGAATGTTGTAGTCACTGAGAGAACGACCATCT 8113 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | |||||||||||| | || ||||||||||| || || || ||||||||||| Sbjct 8114 TCGAGTTGTTTGCCAGCAAAAATTAAACGTTGTTGATCTGGAGGGATGCCTTCTTTGTCT 8173 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 ||| || || ||| | || || | || | ||| || || | ||||| || Sbjct 8174 TGAATCTTTTGTTTCACATTATCAATTGAGTCTGAAGGTTCCACGTCAAGTGTAATAGTC 8233 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || |||| || || || |||||||||||| Sbjct 8234 TTTCCAGTCAATGTCTTGACGAAAATTTGCATA 8266 >seq5008 Length=14815 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || |||||||| || || |||||||| |||||||||||||| | | | | | ||||| Sbjct 6430 ACCAAATGAAGAGTAGATTCTTTTTGGATGTTGTAATCGCTCAAAGTACGTCCATCTTCA 6371 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||||||||| || | |||||||||||||| || ||||| ||||| ||||| | Sbjct 6370 AGTTGTTTGCCTGCAAAGATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTTGTCTTGA 6311 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||| ||| | || || | ||| | ||| ||||| || || ||||| || Sbjct 6310 ATCTTTTGCTTGACATTATCAATCGAATCCGAAGGTTCGACATCCAACGTGATGGTCTTG 6251 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||||| || || || || || ||||| Sbjct 6250 CCTGTCAATGTCTTGACGAAGATCTGCAT 6222 >seq2092 Length=13256 Score = 107 bits (118), Expect = 1e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 15167 GTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCA 15226 || || || ||||| |||||||||||||| | | | | | ||||| | ||| ||||| Sbjct 11891 GTCGATTCCTTTTGGATGTTGTAATCGCTCAAAGTGCGACCATCTTCGAGTTGCTTGCCG 11832 Query 15227 GCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTT 15286 || | |||||||||||||| || ||||| ||||| ||||| |||||| ||| Sbjct 11831 GCAAAGATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTTGTCTTGAATTTTTTGCTTG 11772 Query 15287 ACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTT 15346 ||| | || || | ||| | ||| ||||| || || ||||| ||||| |||| || Sbjct 11771 ACATTATCAATCGAATCCGAAGGTTCGACATCCAATGTGATGGTCTTACCCGTCAAGGTC 11712 Query 15347 TTTACAAAAATTTGCAT 15363 ||||| || || ||||| Sbjct 11711 TTTACGAAGATCTGCAT 11695 >seq419 Length=23932 Score = 105 bits (116), Expect = 5e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 15173 TCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTAT 15232 || ||||| |||||||| ||||| ||| | | | ||||| | ||| ||||| || | Sbjct 23932 TCCTTTTGGATGTTGTAGTCGCTGAGAGTGCGGCCATCTTCGAGTTGCTTGCCGGCAAAG 23873 Query 15233 ATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATT 15292 || | ||||||||| || |||||| ||||| ||||| || || ||| ||| | Sbjct 23872 ATGAGACGTTGTTGATCAGGTGGAATGCCTTCCTTGTCTTGGATCTTTTGCTTGACATTG 23813 Query 15293 TCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACA 15352 || || | ||| | ||| ||||| | ||||||||||||||| |||| || || ||| Sbjct 23812 TCAATAGAATCCGAAGGTTCGACATCGAGGGTAATGGTTTTACCCGTCAATGTCTTGACA 23753 Query 15353 AAAATTTGCAT 15363 || |||||||| Sbjct 23752 AAGATTTGCAT 23742 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 ||||||| | ||| | | ||| ||||| | ||||| || ||||| || |||||||||| Sbjct 23058 TGCCACCACGCAAACGAAGAACCAAATGCAATGTGGATTCCTTTTGGATATTGTAATCGC 22999 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | || | | | ||||| | ||| |||||||| | || | ||||||||| || | Sbjct 22998 TCAGGGTACGACCATCTTCGAGTTGCTTGCCAGCAAAGATAAGACGTTGTTGATCTGGAG 22939 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTAT-TTTCT 15313 |||| ||||| || || ||| || ||| || | || |||| || | || || Sbjct 22938 GAATGCCTTCCTTATCTTGAATCTTTTGCTTGACGTTGTCAATGGAGTC-CGATGGCTCA 22880 Query 15314 ACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| | || || || || || || || || || ||||| |||||||| Sbjct 22879 ACATCGAGCGTGATTGTCTTCCCCGTGAGTGTCTTGACAAAGATTTGCAT 22830 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || ||||| | || || || ||||| |||||||| ||||||| | | | | ||| Sbjct 23497 AAGACCAAATGCAATGTAGATTCCTTTTGGATGTTGTAGTCGCTTAAAGTACGGCCATCT 23438 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | |||||| || || | || | |||||||| || ||||| ||||| ||||| Sbjct 23437 TCGAGTTGTTTACCGGCAAAAATGAGGCGTTGTTGATCTGGAGGAATGCCTTCCTTGTCT 23378 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 || || || ||| | || |||| || | ||| || || | || || || Sbjct 23377 TGGATCTTTTGTTTAACATTATCAATGGAGTCCGAAGGTTCGACGTCAAGTGTGATCGTC 23318 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| |||| || ||||||||||||||||| Sbjct 23317 TTACCGGTCAACGTCTTTACAAAAATTTGCAT 23286 >seq2232 Length=15861 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 15167 GTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCA 15226 || || || ||||| |||||||||||||| | | | | | ||||| | ||| ||||| Sbjct 592 GTCGATTCCTTTTGAATGTTGTAATCGCTCAAAGTACGACCATCTTCGAGTTGCTTGCCG 533 Query 15227 GCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTT 15286 || | |||||||||||||| || ||||| ||||| ||||| || || ||| Sbjct 532 GCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTGTCCTGGATCTTTTGCTTG 473 Query 15287 ACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTT 15346 || | || || | || | |||||||| || || ||||| || || |||| || Sbjct 472 ACGTTGTCAATCGAGTCCGAAGGCTCTACATCCAACGTGATGGTCTTGCCAGTCAATGTC 413 Query 15347 TTTACAAAAATTTGCATATT 15366 || || ||||| |||||||| Sbjct 412 TTGACGAAAATCTGCATATT 393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362155659823353