Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq580 114 8e-21 seq419 91.5 9e-14 >seq580 Length=37562 Score = 114 bits (126), Expect = 8e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 ||||||| ||| ||||||||||| ||||| ||||| || ||||| |||||||| ||| Sbjct 8495 CCGCCTCGTAAACGCAACACCAAGTGCAAGGTCGATTCCTTTTGGATATTGTAGTCACTA 8554 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 | | | || || |||||||| || ||| ||| || |||||||| || || | || Sbjct 8555 AGAGTACGTCCATCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGAGGA 8614 Query 33263 ATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACG 33322 || ||||| || || ||| || || || | | ||||| ||| |||| ||| Sbjct 8615 ATACCTTCCTTGTCTTGAATTTTTTGCTTGACGTTATCAATCGAGTCCGAAGGTTCCACG 8674 Query 33323 TCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 |||| || || || ||||| || || || || || || ||||||||| Sbjct 8675 TCCAACGTAATTGTCTTTCCGGTGAGTGTCTTGACAAAGATTTGCATG 8722 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 |||||||| | ||| || || ||||| || ||||||||| | | || | || || Sbjct 8285 ACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCACTGAGAGTGCGGCCATCTTCG 8344 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 | ||| || ||| ||| || || ||||||||||| | || |||||||| || || Sbjct 8345 AGTTGTTTGCCAGCAAAAATCAATCGTTGCTGGTCTGGTGGGATGCCTTCCTTATCTTGG 8404 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 ||| |||||||| | | ||||| ||| |||| || |||| || || || || Sbjct 8405 ATCTTTTGTTTTACGTTATCAATCGAGTCCGAAGGTTCGACATCCAATGTAATTGTCTTG 8464 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || | || ||||||||||||||||| Sbjct 8465 CCGGTCAACGTCTTTACGAAAATTTGCAT 8493 Score = 91.5 bits (100), Expect = 9e-14 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| ||||| || | || || || ||||| || ||||| ||| || | | | Sbjct 7823 CGCAATACCAAGTGGAGAGTAGATTCCTTTTGAATGTTGTAGTCACTTAATGTACGACCG 7882 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || || | ||| || ||| || || |||||||| || |||| || |||||||| || Sbjct 7883 TCTTCAAGTTGTTTACCAGCGAAAATCAAACGTTGTTGATCCGGAGGGATGCCTTCCTTG 7942 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || ||| || || || | | ||||| |||| |||| ||| |||| || || Sbjct 7943 TCTTGGATCTTTTGCTTGACATTATCAATCGAGTCGGATGGTTCAACATCCAAGGTAATG 8002 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||||||||| | |||||| || || |||||||| Sbjct 8003 GTTTTTCCCGTCAAAGTTTTGACAAAGATTTGCAT 8037 >seq419 Length=23932 Score = 91.5 bits (100), Expect = 9e-14 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 |||||||||||||| || || ||||| |||||||| || |||| | || ||| || Sbjct 23266 ACCAAATGCAATGTAGATTCCTTTTGGATATTGTAGTCGCTCAAAGTTCGTCCGTCTTCG 23207 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 | || || ||| ||| || | |||||| || || | || |||||||| || || | Sbjct 23206 AGCTGTTTACCAGCAAAGATAAGACGTTGTTGATCTGGAGGAATGCCTTCCTTATCTTGA 23147 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 ||| ||||| || | | || | ||| |||| ||||| || || ||||| || Sbjct 23146 ATCTTTTGTTTCACGTTGTCGATGGAGTCCGATGGTTCGACGTCAAGTGTGATCGTCTTA 23087 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || | ||| || || || ||||||||| Sbjct 23086 CCGGTCAAAGTCTTAACAAAGATTTGCATG 23057 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 |||||||||||||| || || ||||| ||||||||||| || | | || || Sbjct 23038 ACCAAATGCAATGTGGATTCCTTTTGGATATTGTAATCGCTCAGGGTACGACCATCTTCG 22979 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 | |||||| ||| ||| || | |||||| || || | || |||||||| || || | Sbjct 22978 AGTTGCTTGCCAGCAAAGATAAGACGTTGTTGATCTGGAGGAATGCCTTCCTTATCTTGA 22919 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 ||| || || || | | ||| | ||| || | ||| || || || || || || Sbjct 22918 ATCTTTTGCTTGACGTTGTCAATGGAGTCCGATGGCTCAACATCGAGCGTGATTGTCTTC 22859 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCATGTTT 33373 ||||| || || || || || ||||||||| || Sbjct 22858 CCCGTGAGTGTCTTGACAAAGATTTGCATGGTT 22826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318756880751034