Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq2584 185 7e-42 >seq2584 Length=5567 Score = 185 bits (204), Expect = 7e-42 Identities = 377/555 (68%), Gaps = 4/555 (1%) Strand=Plus/Plus Query 13143 ACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAA 13202 |||| | || ||||| ||||| || | || ||||| | | || || ||||| |||| Sbjct 3227 ACATGAGGCAGGCAAAGTCACAATGAAGACCCTCATCACGAGAAATAAGTTCGTTCGAAA 3286 Query 13203 ATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAAC-GAACCC 13261 | ||| ||| ||||| | || ||||| || | |||||| || | |||||| || || Sbjct 3287 AGCTTAAACCAGGCATCAAACCACGTTTCTTGAGCCAAAAGATCG-AGCAAAATGATCCT 3345 Query 13262 GaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTT 13321 ||||| || || |||||||| || ||||| |||| | | ||| |||||| | | || Sbjct 3346 GAAAAGAAAATACCTTCAACAGCAGCAAAGGCTACAATACGTTCTGCATACGCAGCAATT 3405 Query 13322 TTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCT 13381 || | | ||| || ||||| || ||||| ||| || || || | || Sbjct 3406 TTGCCATTGCACCATTTAAGAGCCCATTTAGCTTTACGTTGTACACAAGGAATCGTATCA 3465 Query 13382 ATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAG 13441 || || | || | | || ||||||| | |||| ||||||||||| || | || Sbjct 3466 ATAGCCCTCAAAACACGATCTTTTTCCACAATGTCCTTGATATAAGTATCAATGAGCAAC 3525 Query 13442 CTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCC 13501 ||| | |||||||||||||||||| || || ||||| || ||||||||||||||||| Sbjct 3526 GAATAAACTTCTGAATGAATATTTTCGATAGCAATTTGAAATCCATAAAAACATCTAGCT 3585 Query 13502 TCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCA 13561 || | ||| || ||||| | |||| | || || ||||| || || || || || Sbjct 3586 TCAGGTACTTGTACTTCATTGGAAAAATTCATGGCCAAATTTTCATTTACAATACCATCC 3645 Query 13562 CTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTT 13621 || |||||||| || | || || ||||||| | ||| || || | | ||| Sbjct 3646 GATGCTGCAAAAAATGCCAATACATGGGTAATAAAGAATCGTTCATTGTCCGTAAGTTTT 3705 Query 13622 AACCAATCTGGAAAATCTTTTGATAA-ATCTACCTCCTCAACGGTCCAAAAAGAAGCAAC 13680 ||||||| | ||| | || || ||||| || || | ||||||||| ||| | Sbjct 3706 GTCCAATCTTTCATATC-ATGGACAAGATCTAATTCTTCTGCAGTCCAAAAACTAGCTTC 3764 Query 13681 AGCCTTCTTATACAT 13695 ||| ||||||||||| Sbjct 3765 AGCTTTCTTATACAT 3779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430954387894866