Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq2584 179 9e-40 seq580 170 4e-37 seq419 140 7e-28 seq5008 105 2e-17 seq4831 100 7e-16 >seq2584 Length=5567 Score = 179 bits (198), Expect = 9e-40 Identities = 402/598 (67%), Gaps = 7/598 (1%) Strand=Plus/Minus Query 268691 AACCCAGATAGATTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAA 268750 |||||| || |||||||| | ||||| || || || ||| | ||| ||||| || Sbjct 3830 AACCCAAATCGATTTGTGCTTTTTCCTATTCAACACACAGATGTGTGGGAAATGTATAAG 3771 Query 268751 CAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCT-GTCTTATGACTTAATAGA 268809 | || | ||| ||||||||||| ||||||| ||||||| ||| |||| | | ||| Sbjct 3770 AAAGCTGAAGCTAGTTTTTGGACTGCAGAAGAATTAGATCTTGTCC-ATGATATGAAAGA 3712 Query 268810 TTGGA-AAAATTTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTG 268868 ||||| |||| ||| || | ||| || ||||| | || | | || ||||||| Sbjct 3711 TTGGACAAAACTTACGGACA-ATGAACGATTCTTTATTACCCATGTATTGGCATTTTTTG 3653 Query 268869 CAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGA 268928 ||| |||||||| || || |||||| | | ||| || | | || ||||| Sbjct 3652 CAGCATCGGATGGTATTGTAAATGAAAATTTGGCCATGAATTTTTCCAATGAAGTACAAG 3593 Query 268929 TTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGA 268988 | |||||||| ||||||||||| ||||| || || ||||| ||||||||||||||||| Sbjct 3592 TACCTGAAGCTAGATGTTTTTATGGATTTCAAATTGCTATCGAAAATATTCATTCAGAAG 3533 Query 268989 TGTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTT 269048 | || | | || ||||||||||| | || | ||||| | | | || Sbjct 3532 TTTATTCGTTGCTCATTGATACTTATATCAAGGACATTGTGGAAAAAGATCGTGTTTTGA 3473 Query 269049 CTTCTATGAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAA 269108 |||| || || ||||| | ||| || |||||||||| |||||| | Sbjct 3472 GGGCTATTGATACGATTCCTTGTGTACAACGTAAAGCTAAATGGGCTCTTAAATGGTGCA 3413 Query 269109 A---CGATAGCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATAT 269165 | | | | || | || | |||| | | || || ||||| ||||| |||||||| | Sbjct 3412 ATGGCAAAATTGCTGCGTATGCAGAACGTATTGTAGCCTTTGCTGCTGTTGAAGGTATTT 3353 Query 269166 TCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGAT 269225 ||||||| || || ||| | | ||||||||| | |||||| | || | ||||| || | Sbjct 3352 TCTTTTCAGGATCATTTTGCTCGATCTTTTGGCTCAAGAAACGTGGTTTGATGCCTGGTT 3293 Query 269226 TAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTG 269283 ||| || || |||||| | || | || || ||| | || || ||||| || || Sbjct 3292 TAAGCTTTTCGAACGAACTTATTTCTCGTGATGAGGGTCTTCATTGTGACTTTGCCTG 3235 >seq580 Length=37562 Score = 170 bits (188), Expect = 4e-37 Identities = 163/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 |||||||||| |||||||| |||||||| || |||||| |||| | ||| ||||| Sbjct 8057 ACTAGATGTAGAGTAGATTCCTTCTGAATGTTGTAGTCACTGAGAGAACGACCATCTTCG 8116 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 |||||||| ||||||||||||| | |||||||| ||||| || |||||||| || ||| Sbjct 8117 AGTTGTTTGCCAGCAAAAATTAAACGTTGTTGATCTGGAGGGATGCCTTCTTTGTCTTGA 8176 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 |||||| ||| ||||| || | | || |||||| || || |||||||||||||| Sbjct 8177 ATCTTTTGTTTCACATTATCAATTGAGTCTGAAGGTTCCACGTCAAGTGTAATAGTCTTT 8236 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| | ||| || || || || ||||| Sbjct 8237 CCAGTCAATGTCTTGACGAAAATTTGCAT 8265 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || | ||| | ||| ||||| || ||||| || || ||| ||||| | || ||| Sbjct 8282 AGGACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCACTGAGAGTGCGGCCATCT 8341 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || |||||||| ||||||||||| | | || || || || || || ||||| ||||| Sbjct 8342 TCGAGTTGTTTGCCAGCAAAAATCAATCGTTGCTGGTCTGGTGGGATGCCTTCCTTATCT 8401 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || |||||| |||||| || || | | || |||||| || || | |||||| ||| Sbjct 8402 TGGATCTTTTGTTTTACGTTATCAATCGAGTCCGAAGGTTCGACATCCAATGTAATTGTC 8461 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || | || ||||| || || ||||| Sbjct 8462 TTGCCGGTCAACGTCTTTACGAAAATTTGCAT 8493 >seq419 Length=23932 Score = 140 bits (154), Expect = 7e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || | ||| ||||||||||| || || ||||| ||||| | ||||| |||||| Sbjct 23269 AGGACCAAATGCAATGTAGATTCCTTTTGGATATTGTAGTCGCTCAAAGTTCGTCCGTCT 23210 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || ||||| |||||||| || || | |||||||| ||||| || ||||| ||||| Sbjct 23209 TCGAGCTGTTTACCAGCAAAGATAAGACGTTGTTGATCTGGAGGAATGCCTTCCTTATCT 23150 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 ||||||||| ||| || || || | || || ||||| || || ||||| || ||| Sbjct 23149 TGAATCTTTTGTTTCACGTTGTCGATGGAGTCCGATGGTTCGACGTCAAGTGTGATCGTC 23090 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || | || || ||||| || ||||| Sbjct 23089 TTACCGGTCAAAGTCTTAACAAAGATTTGCAT 23058 Score = 138 bits (152), Expect = 3e-27 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 104356 ATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTG 104415 ||| ||||||||||| || || || || ||||| || ||| | || ||||| ||||| Sbjct 23489 ATGCAATGTAGATTCCTTTTGGATGTTGTAGTCGCTTAAAGTACGGCCATCTTCGAGTTG 23430 Query 104416 TTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT 104475 ||| || |||||||| || | |||||||| ||||| || ||||| || || || ||||| Sbjct 23429 TTTACCGGCAAAAATGAGGCGTTGTTGATCTGGAGGAATGCCTTCCTTGTCTTGGATCTT 23370 Query 104476 TGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535 | ||| ||||| || | || || |||||| || || ||||| || |||||||| || Sbjct 23369 TTGTTTAACATTATCAATGGAGTCCGAAGGTTCGACGTCAAGTGTGATCGTCTTACCGGT 23310 Query 104536 AAGTGTTTTTACAAATATCTGCAT 104559 | || |||||||| || ||||| Sbjct 23309 CAACGTCTTTACAAAAATTTGCAT 23286 Score = 122 bits (134), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| || || || || |||||| || || | || ||||| |||||||| ||| Sbjct 23710 GTCGATTCCTTTTGGATGTTGTAGTCACTAAGGGTGCGGCCATCTTCAAGTTGTTTACCA 23651 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| || | |||||||| ||||| || ||||| || || ||||||||| || Sbjct 23650 GCAAAAATGAGGCGTTGTTGATCTGGAGGAATGCCTTCCTTGTCTTGAATCTTTTGCTTG 23591 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | || ||| ||||| || || || ||||| |||||||| || | ||| Sbjct 23590 ACGTTGTCAATGGAATCCGATGGTTCGACATCGAGAGTAATGGTCTTACCCGTCAATGTC 23531 Query 104543 TTTACAAATATCTGCAT 104559 || || || || ||||| Sbjct 23530 TTCACGAAGATTTGCAT 23514 Score = 102 bits (112), Expect = 2e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || || || || || ||||| ||||| | || ||||| ||||| || || ||||| Sbjct 23932 TCCTTTTGGATGTTGTAGTCGCTGAGAGTGCGGCCATCTTCGAGTTGCTTGCCGGCAAAG 23873 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || || | ||||||||||| || || ||||| || || || |||||| || ||||| Sbjct 23872 ATGAGACGTTGTTGATCAGGTGGAATGCCTTCCTTGTCTTGGATCTTTTGCTTGACATTG 23813 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | | ||| |||||| || || || ||||| || ||||| || | ||| || ||| Sbjct 23812 TCAATAGAATCCGAAGGTTCGACATCGAGGGTAATGGTTTTACCCGTCAATGTCTTGACA 23753 Query 104549 AATATCTGCAT 104559 || || ||||| Sbjct 23752 AAGATTTGCAT 23742 >seq5008 Length=14815 Score = 105 bits (116), Expect = 2e-17 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || | ||| | ||||||||||| || || || || || | ||| | || || Sbjct 6434 AAGGACCAAATGAAGAGTAGATTCTTTTTGGATGTTGTAATCGCTCAAAGTACGTCCATC 6375 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| |||||||| || ||||| || | | |||||||| ||||| || ||||| || || Sbjct 6374 TTCAAGTTGTTTGCCTGCAAAGATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTTGTC 6315 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||||||| || ||||| || | | ||| |||||| || || | || || || Sbjct 6314 TTGAATCTTTTGCTTGACATTATCAATCGAATCCGAAGGTTCGACATCCAACGTGATGGT 6255 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| || || | ||| || || || |||||||| Sbjct 6254 CTTGCCTGTCAATGTCTTGACGAAGATCTGCAT 6222 >seq4831 Length=17254 Score = 100 bits (110), Expect = 7e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 104341 TAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCT 104400 ||||| ||| || || |||| || |||||| | ||||||||||| || | |||| Sbjct 11382 TAGCCGAAGAACAAGGTGTAGCGTTGATTCTCTTTGAATATTATAATCCCGCAATGTTCG 11441 Query 104401 ACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTC 104460 || |||||||||||||| |||||||| || || | | |||||||||||| || ||||| Sbjct 11442 TCCATCTTCTAGTTGTTTGCCAGCAAATATGAGTCGCATTTGATCAGGAGGAATGCCTTC 11501 Query 104461 TTTATCCTGAATC 104473 ||| || || ||| Sbjct 11502 TTTTTCTTGGATC 11514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151319726026764