Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq2069 91.5 2e-13 seq349 89.7 6e-13 >seq2069 Length=6660 Score = 91.5 bits (100), Expect = 2e-13 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 19356 TACCTGAAATAGGTGATAAGTTTGCTTCTTTTACTGCTCAAAAAGGCACATGTGGTATGA 19415 ||||| |||| || || |||||||||||| | | |||||| || || |||||||| Sbjct 4126 TACCTCAAATTGGGGACAAGTTTGCTTCTCGTCACGGTCAAAAGGGTACGATTGGTATGA 4185 Query 19416 TTTATCGTCAAGAAGATATGCCTTTTACTAAAGATGGTATAGTGCCGGATCTTATTATTA 19475 |||||||||||||||||||||||||| | || || | || ||| |||| | | Sbjct 4186 CATATCGTCAAGAAGATATGCCTTTTACCATCGAAGGCGTCACACCTGATATTATCGTGA 4245 Query 19476 ACCCACATGCTTTTCCAAGTCGAATGAC 19503 |||| || ||| ||||| || ||||| Sbjct 4246 ACCCTCACGCTATTCCATCGCGTATGAC 4273 >seq349 Length=38488 Score = 89.7 bits (98), Expect = 6e-13 Identities = 140/195 (72%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 7060 GATGGATTCCAAGCAGTCATTAAAATACGTCTATCATTTGGATTTGTTTTTAATTTTGTT 7119 || |||||||| |||| | || ||||| | ||||| || |||||||||||| ||||| Sbjct 16937 GACGGATTCCATGCAGATAGCAAGATACGACGATCATCAGG-TTTGTTTTTAATCTTGTT 16995 Query 7120 -ATAATTATTTGTAA-TTGATCTATACCCTGACCTTCATAATTAGTATGACAATTTATAT 7177 || | | | || |||||| | ||| || || |||| ||| || || | | Sbjct 16996 GATGACG-TCAGCAAGTTGATCAACACCTTGTCCAGTGTAATCAGTGTGCATATCAACGT 17054 Query 7178 AATTAGCTCCAAAATGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCTTCTTCAC 7237 | |||||||| ||||| | ||||||||| ||||| | || || | ||| || |||||| Sbjct 17055 ATTTAGCTCCGAAATGACGCCATTGAAAGCCATACACGGGCCCAAGATCTCCAGCTTCAC 17114 Query 7238 GATGATTAAATCCTA 7252 ||||| | ||||||| Sbjct 17115 GATGAGTTAATCCTA 17129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595832277682800