Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq580 145 7e-30 seq2232 138 1e-27 seq2092 134 1e-26 seq419 134 1e-26 seq5008 116 3e-21 >seq580 Length=37562 Score = 145 bits (160), Expect = 7e-30 Identities = 176/240 (73%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || |||| || ||||||||||||||||| || ||||||||||| | Sbjct 8483 AAAATTTGCATCCCGCCTCGTAAACGCAACACCAAGTGCAAGGTCGATTCCTTTTGGATA 8542 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || || || || | ||| ||| |||| ||||| || ||||||| || | ||| Sbjct 8543 TTGTAGTCACTAAGAGTACGTCCATCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGT 8602 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 |||||||||||||||||||| ||||| | ||||||| ||||||| | | | ||| Sbjct 8603 TGATCTGGAGGAATACCTTCCTTGTCTTGAATTTTTTGCTTGACGTTATCAATCGAGTCC 8662 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 | | || ||||| | ||| || || ||||| || || || || |||||||| |||||| Sbjct 8663 GAAGGTTCCACGTCCAACGTAATTGTCTTTCCGGTGAGTGTCTTGACAAAGATTTGCATG 8722 Score = 105 bits (116), Expect = 6e-18 Identities = 166/236 (70%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 94774 TTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATA 94833 ||||| ||||| | | ||||| |||||||| | ||||||||||||||| | ||| || Sbjct 7804 TTACATGCCTCCACGAAGACGCAATACCAAGTGGAGAGTAGATTCCTTTTGAATGTTGTA 7863 Query 94834 ATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGA 94891 || || || ||| || || || || ||||| || | || || || | ||| ||| Sbjct 7864 GTCACT--TAATGTACGACCGTCTTCAAGTTGTTTACCAGCGAAAATCAAACGTTGTTGA 7921 Query 94892 TCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCG 94951 || ||||| || ||||| ||||| | || ||| |||||| | | | ||| | Sbjct 7922 TCCGGAGGGATGCCTTCCTTGTCTTGGATCTTTTGCTTGACATTATCAATCGAGTCGGAT 7981 Query 94952 TGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || | || ||||||||||| || | |||||| |||||||| ||||| Sbjct 7982 GGTTCAACATCCAAGGTAATGGTTTTTCCCGTCAAAGTTTTGACAAAGATTTGCAT 8037 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 94790 AATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTG 94849 || ||||| || | || | |||||||||||| || | ||| || || || | || Sbjct 8048 AAACGCAAGACTAGATGTAGAGTAGATTCCTTCTGAATGTTGTAGTCACTGAGAGAACGA 8107 Query 94850 GAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCT 94909 ||| || || ||||| || |||| ||||| | ||| ||||||||||| || |||||| Sbjct 8108 CCATCTTCGAGTTGTTTGCCAGCAAAAATTAAACGTTGTTGATCTGGAGGGATGCCTTCT 8167 Query 94910 TTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTG 94969 ||||| | ||| ||| || || | | | ||| | | || ||||||| || Sbjct 8168 TTGTCTTGAATCTTTTGTTTCACATTATCAATTGAGTCTGAAGGTTCCACGTCAAGTGTA 8227 Query 94970 ATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || |||||||| | || || || || || ||||| Sbjct 8228 ATAGTCTTTCCAGTCAATGTCTTGACGAAAATTTGCAT 8265 >seq2232 Length=15861 Score = 138 bits (152), Expect = 1e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||||||||| ||||||||||| | ||| |||||||||| ||| ||| || Sbjct 604 ACCAAGTGCAAAGTCGATTCCTTTTGAATGTTGTAATCGCTCAAAGTACGACCATCTTCG 545 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 || || || ||| ||||||| || | ||| |||||||||||||||||||| ||||| | Sbjct 544 AGTTGCTTGCCGGCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTGTCCTGG 485 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || ||| ||||||| | | | | ||| | | || || || | ||||||||| || Sbjct 484 ATCTTTTGCTTGACGTTGTCAATCGAGTCCGAAGGCTCTACATCCAACGTGATGGTCTTG 425 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| | || || || || |||||||| Sbjct 424 CCAGTCAATGTCTTGACGAAAATCTGCAT 396 >seq2092 Length=13256 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||||||||| ||||||||||| | ||| |||||||||| |||| ||| || Sbjct 11903 ACCAAGTGCAAAGTCGATTCCTTTTGGATGTTGTAATCGCTCAAAGTGCGACCATCTTCG 11844 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 || || || ||| ||||||| || | ||| |||||||||||||| ||||| ||||| | | Sbjct 11843 AGTTGCTTGCCGGCAAAGATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTTGTCTTGA 11784 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 |||||| |||||| | | | || | | ||||| || | |||||||| || Sbjct 11783 ATTTTTTGCTTGACATTATCAATCGAATCCGAAGGTTCGACATCCAATGTGATGGTCTTA 11724 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || | || || || ||||||||||| Sbjct 11723 CCCGTCAAGGTCTTTACGAAGATCTGCAT 11695 >seq419 Length=23932 Score = 134 bits (148), Expect = 1e-26 Identities = 184/255 (72%), Gaps = 4/255 (2%) Strand=Plus/Minus Query 94757 AACGGTTTTTTAAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGAT 94816 |||| ||| |||| ||| || || || | ||| || | ||||| ||||| |||||| Sbjct 23308 AACGTCTTTACAAAAATTTGCATGCCACCACGCAAACGGAGGACCAAATGCAATGTAGAT 23249 Query 94817 TCCTTTTGCACGTTATAATCGCTCATAGT--GTTGGAATCCTCCAGCTGTTTTCCGCCAA 94874 |||||||| | || || ||||||| ||| || | || || |||||||| || ||| Sbjct 23248 TCCTTTTGGATATTGTAGTCGCTCAAAGTTCGTCCG--TCTTCGAGCTGTTTACCAGCAA 23191 Query 94875 AGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGG 94934 |||| | | ||| |||||||||||||| ||||| || || | ||| ||| || ||| Sbjct 23190 AGATAAGACGTTGTTGATCTGGAGGAATGCCTTCCTTATCTTGAATCTTTTGTTTCACGT 23131 Query 94935 CGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCA 94994 | ||| | ||| | | |||||||||| ||||| || || || || | ||| || | Sbjct 23130 TGTCGATGGAGTCCGATGGTTCGACGTCAAGTGTGATCGTCTTACCGGTCAAAGTCTTAA 23071 Query 94995 CAAAGATCTGCATGC 95009 ||||||| ||||||| Sbjct 23070 CAAAGATTTGCATGC 23056 Score = 114 bits (126), Expect = 1e-20 Identities = 171/241 (71%), Gaps = 4/241 (2%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || || || | ||| || | ||||| ||||| || ||||||||||| | || | Sbjct 23064 TTTGCATGCCACCACGCAAACGAAGAACCAAATGCAATGTGGATTCCTTTTGGATATTGT 23005 Query 94833 AATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTG 94890 ||||||||| | || || ||| || || || || || ||||||| | | ||| || Sbjct 23004 AATCGCTCA--GGGTACGACCATCTTCGAGTTGCTTGCCAGCAAAGATAAGACGTTGTTG 22947 Query 94891 ATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGC 94950 |||||||||||| ||||| || || | ||| ||| ||||||| | | | | ||| | Sbjct 22946 ATCTGGAGGAATGCCTTCCTTATCTTGAATCTTTTGCTTGACGTTGTCAATGGAGTCCGA 22887 Query 94951 GTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCT 95010 | || || || | |||||| || || || || || || || |||||||| |||||| | Sbjct 22886 TGGCTCAACATCGAGCGTGATTGTCTTCCCCGTGAGTGTCTTGACAAAGATTTGCATGGT 22827 Query 95011 T 95011 | Sbjct 22826 T 22826 Score = 113 bits (124), Expect = 4e-20 Identities = 155/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 ||||| ||||| ||||| |||||||||||||| | ||| || ||||| | ||| | | Sbjct 23500 CGCAAGACCAAATGCAATGTAGATTCCTTTTGGATGTTGTAGTCGCTTAAAGTACGGCCA 23441 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || || || ||||| ||| |||| || | | ||| |||||||||||||| ||||| ||| Sbjct 23440 TCTTCGAGTTGTTTACCGGCAAAAATGAGGCGTTGTTGATCTGGAGGAATGCCTTCCTTG 23381 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || ||| || || | | | ||| | | |||||||||| ||||| Sbjct 23380 TCTTGGATCTTTTGTTTAACATTATCAATGGAGTCCGAAGGTTCGACGTCAAGTGTGATC 23321 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || | || || ||||| || ||||||| Sbjct 23320 GTCTTACCGGTCAACGTCTTTACAAAAATTTGCATGC 23284 Score = 104 bits (114), Expect = 2e-17 Identities = 164/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || || || | ||| || | |||||||| | ||| ||||||||||| | ||| | Sbjct 23748 TTTGCATGCCACCACGCAAACGAAGGACCAAGTGAAGAGTCGATTCCTTTTGGATGTTGT 23689 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | || || | ||| | ||| || || ||||| || |||| || | | ||| |||| Sbjct 23688 AGTCACTAAGGGTGCGGCCATCTTCAAGTTGTTTACCAGCAAAAATGAGGCGTTGTTGAT 23629 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 |||||||||| ||||| ||||| | ||| ||| ||||||| | | | | || | Sbjct 23628 CTGGAGGAATGCCTTCCTTGTCTTGAATCTTTTGCTTGACGTTGTCAATGGAATCCGATG 23569 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| || | || ||||| || || || | || ||||| ||||| ||||| Sbjct 23568 GTTCGACATCGAGAGTAATGGTCTTACCCGTCAATGTCTTCACGAAGATTTGCAT 23514 >seq5008 Length=14815 Score = 116 bits (128), Expect = 3e-21 Identities = 156/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||| || | ||||||||| ||||| | ||| |||||||||| ||| ||| || Sbjct 6430 ACCAAATGAAGAGTAGATTCTTTTTGGATGTTGTAATCGCTCAAAGTACGTCCATCTTCA 6371 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 || ||||| || ||||||| || | ||| |||||||||||||| ||||| ||||| | | Sbjct 6370 AGTTGTTTGCCTGCAAAGATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTTGTCTTGA 6311 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || ||| |||||| | | | || | | ||||| || | ||||||||| || Sbjct 6310 ATCTTTTGCTTGACATTATCAATCGAATCCGAAGGTTCGACATCCAACGTGATGGTCTTG 6251 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATGCTTACAA 95015 || || | || || || ||||||||||| ||||| Sbjct 6250 CCTGTCAATGTCTTGACGAAGATCTGCATCTCTACAA 6214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448261315787880