Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq256 165 1e-36 seq4351 154 2e-33 >seq256 Length=36048 Score = 165 bits (182), Expect = 1e-36 Identities = 199/268 (74%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGC-AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||||||| || || ||||| |||||||| ||||| || || ||||| ||||| Sbjct 20821 GCCAAGCGTCATCGCAAGGTC-CTTCGCGATAACATTCAAGGTATTACTAAGCCTGCTAT 20879 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| || ||||||||||| ||||||||| ||||||| || |||||||||| | Sbjct 20880 CCGTCGTCTCGCACGTCGTGGTGGTGTCAAGCGTATCTCTGGTTTAATCTATGAAGAAAC 20939 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| | ||| | ||| | | | || ||| | ||| | || || || || Sbjct 20940 CCGTGGTGTGCTCAAGGTTTTCTTGGAAAATGTCATCAAGGATTCCGTCACGTACACGGA 20999 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || ||| || ||||| || || | |||||| |||| |||||| | ||||| ||||| Sbjct 21000 ACATGCTCGCCGAAAGACAGTGACAGCTATGGATGTCGTGTATGCACTCAAACGCCAAGG 21059 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | || || ||||| ||||| Sbjct 21060 TCGCACTTTGTACGGCTTTGGTGGTTAA 21087 >seq4351 Length=660 Score = 154 bits (170), Expect = 2e-33 Identities = 194/264 (73%), Gaps = 2/264 (1%) Strand=Plus/Minus Query 16437 AGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGT 16495 |||| ||||||| | || ||||| ||||| |||||||| ||||| ||||| ||||| || Sbjct 660 AGCGCCATCGCAAGGTC-CTTCGTGATAATATCCAAGGTATCACAAAGCCTGCTATTCGC 602 Query 16496 CGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGT 16555 ||||| ||||||||||| || || |||||| | || || ||| |||| ||||| | |||| Sbjct 601 CGTCTAGCTCGTCGTGGCGGTGTGAAGCGTATTTCGGGTTTGATCTACGAAGAAACTCGT 542 Query 16556 GATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCAC 16615 | ||| | ||| | || | | | || ||| | ||| || | ||| || || ||| Sbjct 541 GGTGTACTCAAGGTGTTTTTGGAAAATGTCATCAAGGATTCTGTGACCTACACTGAACAC 482 Query 16616 GCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGT 16675 ||| || |||||||| || |||||||| | || || || ||||| || |||||||| Sbjct 481 GCTCGCCGAAAGACTGTGACTGCCATGGATGTGGTATACGCTTTGAAGCGCCAAGGCCGC 422 Query 16676 AAGATTTATGGTTTTGGAAGTTAA 16699 | | || ||||| || ||||| Sbjct 421 ACTTTGTACGGTTTCGGTGGTTAA 398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79070324000769