Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq2584 215 5e-51 >seq2584 Length=5567 Score = 215 bits (238), Expect = 5e-51 Identities = 384/558 (69%), Gaps = 10/558 (2%) Strand=Plus/Plus Query 21468 ACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAA 21527 |||| | || ||||| |||||||| | ||| ||||| | | || | ||| || |||| Sbjct 3227 ACATGAGGCAGGCAAAGTCACAATGAAGACCCTCATCACGAGAAATAAGTTCGTTCGAAA 3286 Query 21528 ATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTG 21587 | ||||||| ||||| || || | || || | |||||| || || ||||| ||||| Sbjct 3287 AGCTTAAACCAGGCATCAAACCACGTTTCTTGAGCCAAAAGATCGAGCAAAATGATCCTG 3346 Query 21588 AAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTT 21647 |||||||||| || ||||| |||||||| || || | ||||| | || | || || Sbjct 3347 AAAAGAAAATACCTTCAACAGCAGCAAAGGCTACAATACGTTCTGCATACGCAGCAATTT 3406 Query 21648 TATCCAATAT-CCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCA 21706 | ||| | |||||| |||||||| || || || | |||| ||| |||||| Sbjct 3407 TG-CCATTGCACCATTTAAGAGCCCATTTAGCTTTACGTTGTACACAAGGAATCGTATCA 3465 Query 21707 ATAGCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNA 21766 ||||| | |||| | ||| |||||| | | || | || Sbjct 3466 ATAGCCCTCAAAACACGATCTTTTTCCACAATGTCCTTGATATAAGTATCAATGAGCAAC 3525 Query 21767 CTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCC 21826 ||| | ||| ||||| |||||||| || || || |||||||| ||||||||||| || Sbjct 3526 GAATAAACTTCTGAATGAATATTTTCGATAGCAATTTGAAATCCATAAAAACATCTAGCT 3585 Query 21827 TCTGAACATTGAACCTC---GGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCA 21883 || | ||| || || |||| |||| || ||||| ||||||||||| || ||| Sbjct 3586 TCAGGTACTTGTACTTCATTGGAA--AAATTCATG-GCCAAATTTTCATTTACAATACCA 3642 Query 21884 TCACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAAT 21943 || || |||||||||||||||| || | ||||| ||||||| || || || | | Sbjct 3643 TCCGATGCTGCAAAAAATGCCAATACATGGGTAATAAAGAATCGTTCATTGTCCGTAAGT 3702 Query 21944 TTTTTCCAATCTAATAAATCTTTTGATAA-ATCTACTTCTTCAGTTGTCCAAAAGCTAGC 22002 ||| |||||||| | ||| | || || ||||| |||||| | |||||||| ||||| Sbjct 3703 TTTGTCCAATCTTTCATATC-ATGGACAAGATCTAATTCTTCTGCAGTCCAAAAACTAGC 3761 Query 22003 AATAGCCTTTTTATACAT 22020 ||| || |||||||| Sbjct 3762 TTCAGCTTTCTTATACAT 3779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531865342162920