Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq2584 251 9e-62 seq224 241 2e-58 >seq2584 Length=5567 Score = 251 bits (278), Expect = 9e-62 Identities = 426/610 (70%), Gaps = 13/610 (2%) Strand=Plus/Plus Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355 |||| | || || || || || || |||||||| || | | ||| |||||||| |||| Sbjct 3227 ACATGAGGCAGGCAAAGTCACAATGAAGACCCTCATCACGAGAAATAAGTTCGTTCGAAA 3286 Query 33356 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAG 33415 | | | || ||||| | ||||| || || |||||||| || || |||||||| | Sbjct 3287 AGCTTAAACCAGGCATCAAACCACGTTTCTTGAGCCAAAAGATCGAGCAAAATGATCCTG 3346 Query 33416 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGT 33475 ||||||| || ||||| || ||||||||||| | || | ||| |||| | || | | Sbjct 3347 AAAAGAAAATACCTTCAACAGCAGCAAAGGCTACAATACGTTCTGCATACGCAGCAATTT 3406 Query 33476 ---CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33532 ||| ||| || ||||||| | || || || ||||||||| ||||| || | Sbjct 3407 TGCCATTGCACCATTTAAGAGCCCATTTAGCTTTACGTTGTACACAAGGAATCGTATCAA 3466 Query 33533 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCA--AAAG 33590 | || | || | | | |||||| | | || || | ||||||||| || | || | Sbjct 3467 TAGCCCTCAAAACACGATCTTTTTCCACAATGTCCTTGATATAAGTATCAATGAGCAACG 3526 Query 33591 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGC 33650 | || || ||| |||||||| ||||| || || || |||||||| || ||||||||||| Sbjct 3527 AATAAAC--TTCTGAATGAATATTTTCGATAGCAATTTGAAATCCATAAAAACATCTAGC 3584 Query 33651 CTC-GGTAATCTGTACTTC--TGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCC 33707 || |||| | |||||||| || | ||| || | |||||||||||||| || || || Sbjct 3585 TTCAGGTACT-TGTACTTCATTGGAAAAATTCATG--GCCAAATTTTCATTTACAATACC 3641 Query 33708 GTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAG 33767 || ||||||||||| ||||||||||| | ||||| || ||| | || || Sbjct 3642 ATCCGATGCTGCAAAAAATGCCAATACATGGGTAATAAAGAATCGTTCATTGTCCGTAAG 3701 Query 33768 TTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGC 33827 ||| ||||||| || ||||| | | ||||| |||||| | |||||||| || Sbjct 3702 TTTTGTCCAATCTTTCATATCATGGACAAGATCTAATTCTTCTGCAGTCCAAAAACTAGC 3761 Query 33828 CTCTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCT 33887 || || || |||||||| | ||| | || | ||| || || |||| ||||||| Sbjct 3762 TTCAGCTTTCTTATACATTTCCCACACATCTGTGTGTTGAATAGGAAAAAGCACAAATCG 3821 Query 33888 ATTTGGATTT 33897 |||||| ||| Sbjct 3822 ATTTGGGTTT 3831 >seq224 Length=84125 Score = 241 bits (266), Expect = 2e-58 Identities = 800/1220 (66%), Gaps = 36/1220 (3%) Strand=Plus/Minus Query 62637 TAAATGGTTTCGAAGATCTTCTTATTTAGAT-CTTGTGCTTCCAGGCTAT-CAAATGGAT 62694 ||||| ||||| ||||| | |||| || | |||| ||||| || || |||| |||| Sbjct 28243 TAAATAGTTTCAAAGATTTGAATATTGAGTTTCTTG-GCTTC-AGCAGATTCAAAAGGAT 28186 Query 62695 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62754 || | ||||||||| || || || | ||||||||||||||||| ||||| | ||| | Sbjct 28185 AACCCATGAGAATAAAGGCATCAGCAAGCCCTTGAACACCAATACCAATAGGACGATGAC 28126 Query 62755 TCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGA 62814 | |||| || ||||||| |||||| || || || || || || | ||| || | Sbjct 28125 GCATATTGCTTCGTTTAGCTTCTTCAATAGGGTAGTAGTTGATTTCAATCACTTTGTTTA 28066 Query 62815 GATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCAT 62871 ||| | | |||||| ||| | | | || ||| ||| |||||| |||| Sbjct 28065 AATTGCGAGTAACAATT---TTGGTGATTTTATGCAAATTGGTAAAGTCAAATACACCAT 28009 Query 62872 CTATTACAAACATGTTCAAG-GCAACAGATGCCAGATTACAAACGGCTACCTCAT--TAG 62928 | | ||||| | | ||| |||| ||||||| ||| || || || || |||| | | Sbjct 28008 CATTGACAAATTT-TGAAAGAGCAATCGATGCCAAATTGCACACAGCCACTTCATCTTTG 27950 Query 62929 CATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTT 62988 | | | ||||| || | ||| ||| | ||||| | || ||||| ||||| |||| Sbjct 27949 CTT--GTATATTCGATAACTTCACAGCACAAGTTACTCGATTTAATAGTACCTAAGTTTT 27892 Query 62989 GTTGATTACTCTTTTTG---TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTT 63045 |||| || | |||| || || ||||| || || | || |||| |||||||||| Sbjct 27891 GTTGGTT---CGATTTGGAATTGCAAGCATCTTTGTACAACATATATGGTGTACCAGTTT 27835 Query 63046 CAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATC 63105 | || ||||| || | ||| || ||| | ||||||| ||| | ||| | | Sbjct 27834 CGATTTGAGAATCGAGAATGGCAAACCATAATTGCTGAGCCTTGATTGTC--TTTCGAGC 27777 Query 63106 TC--CTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTC 63163 | | ||| ||| || || ||||| ||| || || | ||||| || | Sbjct 27776 ACGACCTTCAGATTCAAATTTGGTGTACAAAGCTTCAAATTCCTTGCCCCAGCAATCTTG 27717 Query 63164 CAATCCAGGACATTCATCCGGACACATCAACGAC--CACTCTCCGTCATCCTTC-ACTCG 63220 ||| |||| | ||||| || || | || ||| || || || | | |||| || || Sbjct 27716 CAAGCCAGAAGCTTCATTTGGGCAAA--AAAGACTCCAATCACCATT-TGCTTCGACACG 27660 Query 63221 TTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTC 63280 |||||||| | |||||| ||||| | || ||| ||||| | | | ||| || Sbjct 27659 CTTCATAAACAAATCAGGGATCCACAAGGCATAAAAGAGATCACGAGCACGGTGTAGTTC 27600 Query 63281 GTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAA 63340 || || ||| || || ||||| | ||| | | |||||||| |||||| ||||| | Sbjct 27599 ATTGCCATGATTTTTCTTGAGATCCAAAAACTCAAAAATATCAGCATGCCATGGTTCAAG 27540 Query 63341 GTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTT 63400 || ||||| | || || || || || || || | || | |||||| | Sbjct 27539 ATACATGGCAAACGAACCCTTACGCTTACCACCACCTTGGTCAACATAGCGAGCGGTATC 27480 Query 63401 ATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATA 63460 ||| | |||| | ||| ||||| |||||||| ||| ||||||||||| ||||| Sbjct 27479 ATTGAATACTCGAAGCATGGGAATGATACCGTTCGATGAGCCATTGGTACCACGAATATA 27420 Query 63461 GCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 63520 || | | |||||||| || | || || || || ||| ||| || || Sbjct 27419 ACTATTTGTTGAGCGAATATTGTGGATATTCACGCCGATACCACCAGCCCATTTGGAAAT 27360 Query 63521 TAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAG 63580 | || ||| |||| || || ||||| ||||| || || ||| || ||||| | Sbjct 27359 ACAAGCACATTGTTTCAAAGTATCATAAATACCTTCAATCGAATCGTCCTTCATGGCCAA 27300 Query 63581 TAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGC 63640 ||||| || |||| ||| |||| ||| || ||||| || | ||||| | ||| Sbjct 27299 AAGAAAGCAAGACGACAATTGTGGACGTGGAGTACCAGCATTGAAAAGAGTAGGTGTAGC 27240 Query 63641 GTGCGTAAACCATTTTTCAGAAAGTAGATTG-TACGTCTCAATAGCTGAGTCTATATCCC 63699 || || || | ||| | | | ||| || || || | |||| | ||||| Sbjct 27239 ATGGGTGAAGAACATTTGACTCA-TGTATTCATAAGTGTCCAAAGCTCCAGCAATATCTT 27181 Query 63700 ATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGT 63759 || |||||| || || || |||||||| | |||||||||||||| |||| | | ||| | Sbjct 27180 CTTTATGAATACCAACAGCAACACGCATGATCATGTGCTGAGGTCGTTCA-CAAACTTTT 27122 Query 63760 TG-TTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAA 63818 |||| || | ||| ||| ||||||||||||||||| ||||| || | ||| | Sbjct 27121 CCATTTACTTGAAGCAAATAGCTCTTTTCCAAAGTTTTAAATCCAAAGTAATCATATTCA 27062 Query 63819 AAGTCTCGTTCGTAAATAAT 63838 || || || || ||||||| Sbjct 27061 AAATCACGATCAGAAATAAT 27042 Score = 82.4 bits (90), Expect = 1e-10 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 62027 ACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGT 62086 |||||| |||||||| || || || || || | |||| ||||||||||||| || Sbjct 28856 ACGTAGGTAGTACATGCCTGTCTTAAGTCCACGTTTCCAAGCGTAAAAATGCATCGAGGT 28797 Query 62087 TAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAA 62146 |||||| ||| ||||| || ||||||| |||||| ||||| |||| ||| || Sbjct 28796 GAGTTTGCTCACACTTGGATCGGCAATATGGACATTCATCGATTGCGATTGACAGATAAA 28737 Query 62147 GGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTT 62206 || || | || ||||| | | || || ||||||| || |||||| | || || Sbjct 28736 TGCACCACGATCAGCAGCAAGATCTAAAATAATCTTTTGCTTAACTTCCCATACTGTCTT 28677 Query 62207 ATAAA 62211 |||| Sbjct 28676 GTAAA 28672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622905672782280