Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq580 134 1e-26 seq419 134 1e-26 seq2232 111 2e-19 seq5008 104 2e-17 seq2092 95.1 1e-14 >seq580 Length=37562 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| ||||| || || |||||| | || ||| | || | ||| || | Sbjct 8037 ATGCAAATCTTTGTCAAAACTTTGACGGGAAAAACCATTACCTTGGATGTTGAACCATCC 7978 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||| | || || | ||||| |||||||| ||||| ||||| || ||||| |||||| Sbjct 7977 GACTCGATTGATAATGTCAAGCAAAAGATCCAAGACAAGGAAGGCATCCCTCCGGATCAA 7918 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | | |||| || || |||||||| ||||| | | | | | || ||||| ||| Sbjct 7917 CAACGTTTGATTTTCGCTGGTAAACAACTTGAAGACGGTCGTACATTAAGTGACTACAAC 7858 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||||||| ||||||||| |||| |||| || | ||| | ||||| Sbjct 7857 ATTCAAAAGGAATCTACTCTCCACTTGGTATTGCGTCTTCGTGGAGG 7811 Score = 127 bits (140), Expect = 2e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || || ||||| |||||||| | || || | || | ||| | Sbjct 8265 ATGCAAATTTTCGTCAAGACATTGACTGGAAAGACTATTACACTTGACGTGGAACCTTCA 8206 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||| | || || | || |||||||||||| ||||||||||| || ||||| |||||| Sbjct 8205 GACTCAATTGATAATGTGAAACAAAAGATTCAAGACAAAGAAGGCATCCCTCCAGATCAA 8146 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | | |||| | ||||||||||||||||||| | | |||| ||||| ||| Sbjct 8145 CAACGTTTAATTTTTGCTGGCAAACAACTCGAAGATGGTCGTTCTCTCAGTGACTACAAC 8086 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981 ||||| || ||||||||| | ||||| ||| || Sbjct 8085 ATTCAGAAGGAATCTACTCTACATCTAGTCTTG 8053 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || ||||| || || || || || | || || | || | ||| | Sbjct 8493 ATGCAAATTTTCGTAAAGACGTTGACCGGCAAGACAATTACATTGGATGTCGAACCTTCG 8434 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||| | || || | || ||||||||||| || || ||||| || || || || || Sbjct 8433 GACTCGATTGATAACGTAAAACAAAAGATCCAAGATAAGGAAGGCATCCCACCAGACCAG 8374 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| || | |||| | ||||||||||||||||||| | | |||| || || ||| Sbjct 8373 CAACGATTGATTTTTGCTGGCAAACAACTCGAAGATGGCCGCACTCTCAGTGATTACAAC 8314 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||||||| ||||| || | ||| ||||||| Sbjct 8313 ATTCAAAAGGAATCCACACTTCATTTGGTCCT 8282 >seq419 Length=23932 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | |||||||| || || || || || ||||||| | || | ||| | Sbjct 23286 ATGCAAATTTTTGTAAAGACGTTGACCGGTAAGACGATCACACTTGACGTCGAACCTTCG 23345 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||| |||| || | || ||||||||||| ||||| ||||| || ||||| |||||| Sbjct 23346 GACTCCATTGATAATGTTAAACAAAAGATCCAAGACAAGGAAGGCATTCCTCCAGATCAA 23405 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | ||||||| | ||| |||||||||||||||| | | | |||||||| ||| Sbjct 23406 CAACGCCTCATTTTTGCCGGTAAACAACTCGAAGATGGCCGTACTTTAAGCGACTACAAC 23465 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || ||||| |||||||| | ||| ||||| || | ||| | || || Sbjct 23466 ATCCAAAAGGAATCTACATTGCATTTGGTCTTGCGTCTTCGTGGTGG 23512 Score = 116 bits (128), Expect = 4e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| || || || || || || ||||||| | || | ||| || Sbjct 23058 ATGCAAATCTTTGTTAAGACTTTGACCGGTAAGACGATCACACTTGACGTCGAACCATCG 23117 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||| ||||||| | || |||||||||||| || || ||||| || ||||| |||||| Sbjct 23118 GACTCCATCGACAACGTGAAACAAAAGATTCAAGATAAGGAAGGCATTCCTCCAGATCAA 23177 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | || || | | || ||||| |||||||| | ||| | |||||||| || Sbjct 23178 CAACGTCTTATCTTTGCTGGTAAACAGCTCGAAGACGGACGAACTTTGAGCGACTACAAT 23237 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || ||||| |||||||| | ||| ||||||| Sbjct 23238 ATCCAAAAGGAATCTACATTGCATTTGGTCCT 23269 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| || ||| | || || || | ||||| |||| | || || Sbjct 22830 ATGCAAATCTTTGTCAAGACACTCACGGGGAAGACAATCACGCTCGATGTTGAGCCATCG 22889 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||| |||| || | ||||| ||||||||| || || ||||| || ||||| |||||| Sbjct 22890 GACTCCATTGACAACGTCAAGCAAAAGATTCAAGATAAGGAAGGCATTCCTCCAGATCAA 22949 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | || || | | ||||| ||||||||||||| | | | | | ||||| || || Sbjct 22950 CAACGTCTTATCTTTGCTGGCAAGCAACTCGAAGATGGTCGTACCCTGAGCGATTACAAT 23009 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || ||||| ||||| || | ||| |||| || Sbjct 23010 ATCCAAAAGGAATCCACATTGCATTTGGTTCT 23041 Score = 105 bits (116), Expect = 6e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| || ||||| || || ||| | || ||| |||| | ||| | Sbjct 23742 ATGCAAATCTTTGTCAAGACATTGACGGGTAAAACCATTACCCTCGATGTCGAACCTTCG 23801 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || | || || | ||||| |||||||| ||||| ||||| || || || |||||| Sbjct 23802 GATTCTATTGACAATGTCAAGCAAAAGATCCAAGACAAGGAAGGCATTCCACCTGATCAA 23861 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | ||||| | | |||||| ||||||||||||| | | |||||||||| ||| Sbjct 23862 CAACGTCTCATCTTTGCCGGCAAGCAACTCGAAGATGGCCGCACTCTCAGCGACTACAAC 23921 Query 26949 ATTCAAAAAGA 26959 || ||||| || Sbjct 23922 ATCCAAAAGGA 23932 >seq2232 Length=15861 Score = 111 bits (122), Expect = 2e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 26762 AAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGA 26821 || ||| ||||| | || || || ||||| ||||| || | ||||| | || |||| Sbjct 389 AAGCAATATGCAGATTTTCGTCAAGACATTGACTGGCAAGACCATCACGTTGGATGTAGA 448 Query 26822 ATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCC 26881 | ||| | || || | ||||| |||||||| ||||| ||||| || ||||| Sbjct 449 GCCTTCGGACTCGATTGACAACGTCAAGCAAAAGATCCAGGACAAGGAAGGTATTCCTCC 508 Query 26882 CGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGA 26941 ||||||||| | | || | | |||||| ||||||||||||| | | | | ||||| Sbjct 509 AGATCAACAACGTTTGATCTTTGCCGGCAAGCAACTCGAAGATGGTCGTACTTTGAGCGA 568 Query 26942 CTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || ||||||||||| ||||| ||| | || ||||||| Sbjct 569 TTACAACATTCAAAAGGAATCGACTTTGCACTTGGTCCT 607 >seq5008 Length=14815 Score = 104 bits (114), Expect = 2e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 26844 GTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTAC 26903 ||||| ||||||||| ||||| ||||| || ||||| ||||||||| | | || | Sbjct 6297 GTCAAGCAAAAGATTCAAGACAAGGAAGGCATTCCTCCAGATCAACAACGTTTGATCTTT 6356 Query 26904 GGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCT 26963 | ||||||||||| ||||||| | | | ||||| || ||||| |||||||||||| Sbjct 6357 GCAGGCAAACAACTTGAAGATGGACGTACTTTGAGCGATTACAACATCCAAAAAGAATCT 6416 Query 26964 ACTATCCATCTGGTCCT 26980 ||| | ||| ||||||| Sbjct 6417 ACTCTTCATTTGGTCCT 6433 >seq2092 Length=13256 Score = 95.1 bits (104), Expect = 1e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 26844 GTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTAC 26903 ||||| ||||| ||| ||||| ||||| || ||||| ||||||||| | | || | Sbjct 11770 GTCAAGCAAAAAATTCAAGACAAGGAAGGCATTCCTCCAGATCAACAACGTTTGATCTTT 11829 Query 26904 GGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCT 26963 | |||||| ||||||||||||| | | | | ||||| || ||||| ||||| ||||| Sbjct 11830 GCCGGCAAGCAACTCGAAGATGGTCGCACTTTGAGCGATTACAACATCCAAAAGGAATCG 11889 Query 26964 ACTATCCATCTGGTCCT 26980 ||| | || ||||||| Sbjct 11890 ACTTTGCACTTGGTCCT 11906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478630491167760