Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq224 365 1e-95 seq2584 185 2e-41 >seq224 Length=84125 Score = 365 bits (404), Expect = 1e-95 Identities = 941/1419 (66%), Gaps = 22/1419 (2%) Strand=Plus/Plus Query 363447 TGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGA 363506 |||||| || ||||| ||| | |||||||||||| ||||||| ||| ||| ||| Sbjct 27131 TGAACGACCTCAGCACATGATCATGCGTGTTGCTGTTGGTATTCATAAAGAAGATATTGC 27190 Query 363507 TGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTA-TTCACGCACGCCACGCCAA 363565 || || | || || ||| | | ||| | ||| ||||| || || || || | Sbjct 27191 TGGAGCTTTGGACACTTATGAATACATGAGT-CAAATGTTCTTCACCCATGCTACACCTA 27249 Query 363566 CAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGA 363625 | | | ||||||||| |||| |||||| |||| |||||||||||| | |||| Sbjct 27250 CTCTTTTCAATGCTGGTACTCCACGTCCACAATTGTCGTCTTGCTTTCTTTTGGCCATGA 27309 Query 363626 AGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGA 363685 |||||||||| || || ||||| | ||| || | || | |||||| ||||||||| Sbjct 27310 AGGACGATTCGATTGAAGGTATTTATGATACTTTGAAACAATGTGCTTGTATTTCCAAAT 27369 Query 363686 ATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTACATTCGCG 363745 || || || || || || ||||||||| |||| || || ||||| ||||| | Sbjct 27370 GGGCTGGTGGTATCGGCGTGAATATCCACAATATTCGCTCAACAAATAGTTATATTCGTG 27429 Query 363746 GCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGA 363805 | || || | ||||| || | ||||||||||||| || || | |||| || Sbjct 27430 GTACCAATGGCTCATCGAACGGTATCATTCCCATGCTTCGAGTATTCAATGATACCGCTC 27489 Query 363806 GGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTC 363865 | || || ||||| ||||| || ||||| || || ||||||| |||||||| || || Sbjct 27490 GCTATGTTGACCAAGGTGGTGGTAAGCGTAAGGGTTCGTTTGCCATGTATCTTGAACCAT 27549 Query 363866 ATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGC 363925 ||||| ||||||||||||||| | || ||| |||||| || || || | | Sbjct 27550 GGCATGCTGATATTTTTGAGTTTTTGGATCTCAAGAAAAATCATGGCAATGAACTACACC 27609 Query 363926 GTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGG 363985 |||| |||||||| || ||||| | ||| | |||| ||||||||||| || || | Sbjct 27610 GTGCTCGTGATCTCTTTTATGCCTTGTGGATCCCTGATTTGTTTATGAAGCGTGTCGAAG 27669 Query 363986 CAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTC-CGATGTATGG 364044 || | ||||| || ||||||||| | ||| | | || ||| | ||| ||| Sbjct 27670 CAAATGGTGATTGGAGTCTTTTTTGCCCAAATGAAGCTTCTGG-CTTGCAAGATTGCTGG 27728 Query 364045 GGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACA 364104 || | || | || ||| | ||| || | |||||| || || ||||| |||||| Sbjct 27729 GGCAAGGAATTTGAAGCTTTGTACACCAAATTTGAATCTGAAGGTCGTGCTCGAAAGACA 27788 Query 364105 ATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCC 364164 || || ||| | ||||||||||||| | ||||| || || || || || ||||| Sbjct 27789 ATCAAGGCTCAGCAATTATGGTTTGCCATTCTCGATTCTCAAATCGAAACTGGTACACCA 27848 Query 364165 TATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATT 364224 |||||||||||||||||| | ||||| ||| || ||||| || || | ||||| ||| Sbjct 27849 TATATGTTGTACAAAGATGCTTGCAATTCCAAATCGAACCAACAAAACTTAGGTACTATT 27908 Query 364225 CAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTA 364284 | ||| ||| | || || |||| ||||| || || || || || Sbjct 27909 AAATCGAGTAACTTGTGCTGTGAAGTTATCGAATATACAAGCAAAGATGAAGTGGCTGTG 27968 Query 364285 TGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAAGATGGTACTTTTGAC--CACC 364342 || || | || ||||| || ||| | ||||| || |||||| |||||| ||| Sbjct 27969 TGCAATTTGGCATCGATTGCTCTTTCAAAATTTGTCAATGATGGTGTATTTGACTTTACC 28028 Query 364343 AGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGACAAGGTTATCGACAAGA 364402 | || | || | | ||| | || |||| ||||| | |||| || || || | | Sbjct 28029 A--ATTTGCATAAAATCACCAAAATTGTTACTCGCAATTTAAACAAAGTGATTGAAATCA 28086 Query 364403 ATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTG 364462 | || || || ||| ||||| | || |||||||||||||| || |||||| ||| Sbjct 28087 ACTACTACCCTATTGAAGAAGCTAAACGAAGCAATATGCGTCATCGTCCTATTGGTATTG 28146 Query 364463 GTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAG----ATGGCATTTGATTCGCCT 364518 |||| || || || ||||| | ||| || |||| | || | ||||| || || Sbjct 28147 GTGTTCAAGGGCTTGCTGATGCCTTT---ATTCTCATGGGTTAT-CCTTTTGAATCTGCT 28202 Query 364519 GACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAAT-GACTGC 364577 || || || |||| | ||||||||||| || || ||| | || || Sbjct 28203 GAAGCCAAGAAACTCAATATTCAAATCTTTGAAACTATTTACCATGCATCCATGGAAACA 28262 Query 364578 TTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCCTCTTTC 364637 | | || | ||| |||| | || | ||| || |||| || || ||| | Sbjct 28263 TCCATGGAAATTGCCAAAGAATTTGGTCCA-TACGAAACGTATGCAGGCTCTCCTGTAAG 28321 Query 364638 GCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATGGAACTGGGA 364697 | || | ||||| | |||| | ||| ||| | ||| | | ||| |||||| Sbjct 28322 CAAAGGTATCTTCCAATATGATATGTGGGGTGTTTCTCCAACAAATCTTTGGGACTGGGC 28381 Query 364698 TACGCT--ACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTCCCTCGTTACAGCGCCC 364755 ||| || | | || | || |||||||||| |||||| || || | || || Sbjct 28382 TACACTCAAAGCTC--AAGTGGCCAAGCATGGTATTCGCAATTCTCTTTTGCTTGCCCCA 28439 Query 364756 ATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACA 364815 ||||| || |||||||||||||| || || || ||||| || | | ||||| |||||| Sbjct 28440 ATGCCAACAGCTTCTACTGCACAAATTCTTGGCAACAATGAATCAATTGAACCATTTACA 28499 Query 364816 AGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTT 364854 ||| | || || || || |||||| | || |||||| Sbjct 28500 TCCAACATGTACTCTCGTCGTGTTCTTGCTGGTGAATTT 28538 >seq2584 Length=5567 Score = 185 bits (204), Expect = 2e-41 Identities = 601/917 (66%), Gaps = 30/917 (3%) Strand=Plus/Minus Query 22031 CTGAGCCACTTCTTATTG-AGAATAAAGATCGTTTCGTACTATTTCCGATTGTACACGAA 22089 |||| ||| ||||||| | | || | |||| || || || ||||| ||| |||| | Sbjct 3850 CTGAACCA-TTCTTATCGGAAAACCCAAATCGATTTGTGCTTTTTCCTATTCAACACACA 3792 Query 22090 GATATTTATGAAGAATACAAGAAAGCAGAAGCTTCCCTATGGGGTGTTTCCGAAATTGAT 22149 ||| | | ||| || |||||||| |||||| | ||| || ||| | ||| Sbjct 3791 GATGTGTGGGAAATGTATAAGAAAGCTGAAGCTAGTTTTTGGACTGCAGAAGAATTAGAT 3732 Query 22150 ATT-TCCACTGATAAGACGGATTGGCCAAAACTTACAGAAAACGAACAACATTTTATCAA 22208 || |||| ||||| || |||||| |||||||||| || || |||| | ||||| | Sbjct 3731 CTTGTCCA-TGATATGAAAGATTGGACAAAACTTACGGACAATGAACGATTCTTTATTAC 3673 Query 22209 ATATATTCTAGCATTCTTTGCTACCGCAGACGGTATAGTTTTTGAGAATCTAGTGACTAA 22268 || | | ||||| ||||| | | || ||||| || ||| ||| | | | || Sbjct 3672 CCATGTATTGGCATTTTTTGCAGCATCGGATGGTATTGTAAATGAAAATTTGGCCATGAA 3613 Query 22269 TTTTGCATCTGAAATTCAATACCCAGAGGCCAGATGTTTCTATGGTGTGCAAATGATGAT 22328 |||| | |||| | ||| || || || |||||||| ||||| | ||||| || Sbjct 3612 TTTTTCCAATGAAGTACAAGTACCTGAAGCTAGATGTTTTTATGGATTTCAAATTGCTAT 3553 Query 22329 TGAAAATGTTCACGCGGAAACATATTCTATGATGCT-ACAGTCACTCGTAGAA--GATAA 22385 |||||| |||| | ||| ||||| | |||| | | ||| || | || | Sbjct 3552 CGAAAATATTCATTCAGAAGTTTATTC---GTTGCTCATTGATACTTATATCAAGGACAT 3496 Query 22386 AGACGAACAACGAAACT-TATTCCGCGCGATTCGCACCATTCAATCAATTAAGAATAAGG 22444 | ||| || || | | || | || ||| || |||| | | | ||| | Sbjct 3495 TGTGGAAAAA-GATCGTGTTTTGAGGGCTATTGATACGATTCCTTGTGTACAACGTAAAG 3437 Query 22445 CAGATTGGGCGCTGAAATGGATGAACAATG--AACGTTCATTCG----CGGAACGTCTTA 22498 | | ||||| || |||||| || ||||| || || | || | |||||| || Sbjct 3436 CTAAATGGGCTCTTAAATGG-TG--CAATGGCAAAATTGCTGCGTATGCAGAACGTATTG 3380 Query 22499 TTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGC 22558 | || ||||||| |||||||| ||||||||||| ||| ||||||| | |||||||||| Sbjct 3379 TAGCCTTTGCTGCTGTTGAAGGTATTTTCTTTTCAGGATCATTTTGCTCGATCTTTTGGC 3320 Query 22559 TaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATG 22618 | || ||||||| | ||||| ||| ||| ||||| || || | ||| || |||| Sbjct 3319 TCAAGAAACGTGGTTTGATGCCTGGTTTAAGCTTTTCGAACGAACTTATTTCTCGTGATG 3260 Query 22619 AGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATATCATTCATAAACTTC 22678 ||||||||||| || ||||| || | | ||| || | |||| | || ||| Sbjct 3259 AGGGTCTTCATTGTGACTTTGCCTGCCTCATGTATTCCAAGC---TCATCAACAAGCTTT 3203 Query 22679 CATATGAAACTGTACTTGATATTATTACAAATGCAGTTGAACTTGAACGTCTATTTATTT 22738 | | ||| | | | ||| |||||| |||| |||| | ||||| | |||| | | Sbjct 3202 CTAACGAACGTATTCATGAAATTATTGGGGATGCTGTTGCAATTGAAAAGCAATTTGTCT 3143 Query 22739 GCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATC---AATGAGTACATATA 22795 || | | |||||| ||||||||||| || | ||| ||| | ||| | Sbjct 3142 CGGAATCTCTTCCAGTAGAACTCATTGGTATGAA---CTCATCTCTCATGTGCGAATACA 3086 Query 22796 TTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATTATAACGTCG 22855 || |||| ||| ||||| || | | || || | | |||| ||| || | | Sbjct 3085 TTGAATTCTGTGCTGATCGCCTTCTCCAAGCCCTTGGAGCTACCAAGCTTTACAATGCCA 3026 Query 22856 TTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTTCGAAA 22915 |||||||| || |||||||| | || || ||| ||||||||||||| || ||||||| Sbjct 3025 AGAATCCATTCGACTGGATGGACATGATATCTCTTCAAGGAAAGACCAACTTTTTCGAAA 2966 Query 22916 AAAGAGTTGGTGAATAC 22932 | | || ||||||||| Sbjct 2965 AGCGTGTCGGTGAATAC 2949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303264543070406