Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq419 125 6e-24 seq580 113 4e-20 seq2232 107 2e-18 seq5008 102 7e-17 seq2092 95.1 1e-14 >seq419 Length=23932 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | |||||||| || || || || || |||| || | || ||||| | Sbjct 23286 ATGCAAATTTTTGTAAAGACGTTGACCGGTAAGACGATCACACTTGACGTCGAACCTTCG 23345 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||| |||| || | || ||||||||||| ||||| |||||||| ||||| |||||| Sbjct 23346 GACTCCATTGATAATGTTAAACAAAAGATCCAAGACAAGGAAGGCATTCCTCCAGATCAA 23405 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | || |||| | ||| || ||||||||||||| | | | | ||||| || ||| Sbjct 23406 CAACGCCTCATTTTTGCCGGTAAACAACTCGAAGATGGCCGTACTTTAAGCGACTACAAC 23465 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 || ||||| ||||||||| | ||||| || || Sbjct 23466 ATCCAAAAGGAATCTACATTGCATTTGGTCTT 23497 Score = 120 bits (132), Expect = 3e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || ||| | || || || | || || |||| || ||| ||| | Sbjct 22830 ATGCAAATCTTTGTCAAGACACTCACGGGGAAGACAATCACGCTCGATGTTGAG-CCATC 22888 Query 24051 G-ACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 | || |||| || | ||||| ||||||||| || || |||||||| ||||| ||||| Sbjct 22889 GGACTCCATTGACAACGTCAAGCAAAAGATTCAAGATAAGGAAGGCATTCCTCCAGATCA 22948 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | || || | | ||||||||||||||||||| | | | | |||||||| || Sbjct 22949 ACAACGTCTTATCTTTGCTGGCAAGCAACTCGAAGATGGTCGTACCCTGAGCGATTACAA 23008 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGT 24199 || ||||| ||||| ||| | ||||| || Sbjct 23009 TATCCAAAAGGAATCCACATTGCATTTGGT 23038 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || ||||| || || ||| | |||||| |||| ||||| | Sbjct 23742 ATGCAAATCTTTGTCAAGACATTGACGGGTAAAACCATTACCCTCGATGTCGAACCTTCG 23801 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || | || || | ||||| |||||||| ||||| |||||||| || || |||||| Sbjct 23802 GATTCTATTGACAATGTCAAGCAAAAGATCCAAGACAAGGAAGGCATTCCACCTGATCAA 23861 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | || || | | |||||||||||||||||||| | | | ||||||| || ||| Sbjct 23862 CAACGTCTCATCTTTGCCGGCAAGCAACTCGAAGATGGCCGCACTCTCAGCGACTACAAC 23921 Query 24171 ATTCAAAAAGA 24181 || ||||| || Sbjct 23922 ATCCAAAAGGA 23932 Score = 105 bits (116), Expect = 6e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || || || || || |||| || | || ||||| ||| | Sbjct 23058 ATGCAAATCTTTGTTAAGACTTTGACCGGTAAGACGATCACACTTGACGTCGAA-CCATC 23116 Query 24051 G-ACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 | || ||||||| | || |||||||||||| || || |||||||| ||||| ||||| Sbjct 23117 GGACTCCATCGACAACGTGAAACAAAAGATTCAAGATAAGGAAGGCATTCCTCCAGATCA 23176 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | || || | | || || || |||||||| | ||| | ||||| || || Sbjct 23177 ACAACGTCTTATCTTTGCTGGTAAACAGCTCGAAGACGGACGAACTTTGAGCGACTACAA 23236 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGT 24199 || ||||| ||||||||| | ||||| || Sbjct 23237 TATCCAAAAGGAATCTACATTGCATTTGGT 23266 >seq580 Length=37562 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| || || |||||| | |||||| | || || || | | Sbjct 8037 ATGCAAATCTTTGTCAAAACTTTGACGGGAAAAACCATTACCTTGGATGTTGAACCATCC 7978 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||| | || || | ||||| |||||||| ||||| |||||||| ||||| |||||| Sbjct 7977 GACTCGATTGATAATGTCAAGCAAAAGATCCAAGACAAGGAAGGCATCCCTCCGGATCAA 7918 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | |||||| || || || ||||| ||||| | | | | || || || ||| Sbjct 7917 CAACGTTTGATTTTCGCTGGTAAACAACTTGAAGACGGTCGTACATTAAGTGACTACAAC 7858 Query 24171 ATTCAAAAAGAATCTAC 24187 |||||||| |||||||| Sbjct 7857 ATTCAAAAGGAATCTAC 7841 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || ||||| |||||||| | ||||| | || || || | Sbjct 8265 ATGCAAATTTTCGTCAAGACATTGACTGGAAAGACTATTACACTTGACGTGGAACCTTCA 8206 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||| | || || | || |||||||||||| |||||||||||||| ||||| |||||| Sbjct 8205 GACTCAATTGATAATGTGAAACAAAAGATTCAAGACAAAGAAGGCATCCCTCCAGATCAA 8146 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | | |||| | ||||| ||||||||||||| | |||| || || ||| Sbjct 8145 CAACGTTTAATTTTTGCTGGCAAACAACTCGAAGATGGTCGTTCTCTCAGTGACTACAAC 8086 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 ||||| || |||||||| | ||| |||| || Sbjct 8085 ATTCAGAAGGAATCTACTCTACATCTAGTCTT 8054 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || ||||| || || || || || | ||||| | || ||||| | Sbjct 8493 ATGCAAATTTTCGTAAAGACGTTGACCGGCAAGACAATTACATTGGATGTCGAACCTTCG 8434 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||| | || || | || ||||||||||| || || |||||||| || || || || Sbjct 8433 GACTCGATTGATAACGTAAAACAAAAGATCCAAGATAAGGAAGGCATCCCACCAGACCAG 8374 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || || |||||| | ||||| ||||||||||||| | | | |||| ||||| ||| Sbjct 8373 CAACGATTGATTTTTGCTGGCAAACAACTCGAAGATGGCCGCACTCTCAGTGATTACAAC 8314 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||||||| ||||| ||| ||||||| || || | ||| | || || Sbjct 8313 ATTCAAAAGGAATCCACACTTCATTTGGTCCTACGTTTGCGTGGTGG 8267 >seq2232 Length=15861 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 23984 AAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGA 24043 || ||| ||||| | || || || ||||| ||||| || | || || | || || || Sbjct 389 AAGCAATATGCAGATTTTCGTCAAGACATTGACTGGCAAGACCATCACGTTGGATGTAGA 448 Query 24044 GGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCC 24103 | | ||| | || || | ||||| |||||||| ||||| ||||| || ||||| Sbjct 449 GCCTTCGGACTCGATTGACAACGTCAAGCAAAAGATCCAGGACAAGGAAGGTATTCCTCC 508 Query 24104 CGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGA 24163 |||||||| | |||| | | |||||||||||||||||||| | | | ||||| Sbjct 509 AGATCAACAACGTTTGATCTTTGCCGGCAAGCAACTCGAAGATGGTCGTACTTTGAGCGA 568 Query 24164 TTATAACATTCAAAAAGAATCTAC 24187 ||| ||||||||||| ||||| || Sbjct 569 TTACAACATTCAAAAGGAATCGAC 592 >seq5008 Length=14815 Score = 102 bits (112), Expect = 7e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 24066 GTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTAC 24125 ||||| ||||||||| ||||| |||||||| ||||| |||||||| | |||| | Sbjct 6297 GTCAAGCAAAAGATTCAAGACAAGGAAGGCATTCCTCCAGATCAACAACGTTTGATCTTT 6356 Query 24126 GGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCT 24185 | ||||| ||||| ||||||| | | | |||||||| ||||| |||||||||||| Sbjct 6357 GCAGGCAAACAACTTGAAGATGGACGTACTTTGAGCGATTACAACATCCAAAAAGAATCT 6416 Query 24186 ACAATTCATTTAGT 24199 || ||||||| || Sbjct 6417 ACTCTTCATTTGGT 6430 >seq2092 Length=13256 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 24066 GTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTAC 24125 ||||| ||||| ||| ||||| |||||||| ||||| |||||||| | |||| | Sbjct 11770 GTCAAGCAAAAAATTCAAGACAAGGAAGGCATTCCTCCAGATCAACAACGTTTGATCTTT 11829 Query 24126 GGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCT 24185 | |||||||||||||||||||| | | | |||||||| ||||| ||||| ||||| Sbjct 11830 GCCGGCAAGCAACTCGAAGATGGTCGCACTTTGAGCGATTACAACATCCAAAAGGAATCG 11889 Query 24186 AC 24187 || Sbjct 11890 AC 11891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429908055906615