Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq2092 116 3e-21 seq2232 114 1e-20 seq580 105 6e-18 seq5008 98.7 9e-16 seq419 98.7 9e-16 >seq2092 Length=13256 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || || || | ||||| |||||||| ||||||||||||||| Sbjct 11921 CCACCACGAAGGCGAAGGACCAAGTGCAAAGTCGATTCCTTTTGGATGTTGTAATCGCTC 11862 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || || || |||||||| || |||| ||||| || || || ||||| Sbjct 11861 AAAGTGCGACCATCTTCGAGTTGCTTGCCGGCAAAGATCAAACGTTGTTGATCTGGAGGA 11802 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||||| ||||||| | || | | ||| | | |||| Sbjct 11801 ATGCCTTCCTTGTCTTGAATTTTTTGCTTGACATTATCAATCGAATCCGAAGGTTCGACA 11742 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| ||||| || | || |||||||| |||||||| Sbjct 11741 TCCAATGTGATGGTCTTACCCGTCAAGGTCTTTACGAAGATCTGCAT 11695 >seq2232 Length=15861 Score = 114 bits (126), Expect = 1e-20 Identities = 176/250 (70%), Gaps = 2/250 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || || || | ||||| |||||||||||||||||||||||| Sbjct 622 CCACCACGAAGACGAAGGACCAAGTGCAAAGTCGATTCCTTTTGAATGTTGTAATCGCTC 563 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || || |||||||| || |||| ||||| || || || ||||| Sbjct 562 AAAGTACGACCATCTTCGAGTTGCTTGCCGGCAAAGATCAAACGTTGTTGATCTGGAGGA 503 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||||||| | || | | || | | ||| | Sbjct 502 ATACCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCAATCGAGTCCGAAGGCTCTACA 443 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACTTATTTTATT 131247 || | || | ||| || || || | || || |||||||||||||| || ||| | Sbjct 442 TCCAACGTGATGGTCTTGCCAGTCAATGTCTTGACGAAAATCTGCAT--ATTGCTTTCTA 385 Query 131248 CCTTCCTCTT 131257 ||||| |||| Sbjct 384 CCTTCTTCTT 375 >seq580 Length=37562 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || || | ||||| || || || | || || ||||||||||||||||| || || Sbjct 7810 GCCTCCACGAAGACGCAATACCAAGTGGAGAGTAGATTCCTTTTGAATGTTGTAGTCACT 7869 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || || ||| || || || || || ||| | || ||||| || || |||||||| Sbjct 7870 TAATGTACGACCGTCTTCAAGTTGTTTACCAGCGAAAATCAAACGTTGTTGATCCGGAGG 7929 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| ||||| ||||| ||| || ||||||| | || | | |||| | || | Sbjct 7930 GATGCCTTCCTTGTCTTGGATCTTTTGCTTGACATTATCAATCGAGTCGGATGGTTCAAC 7989 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| |||||| || || | |||||| || || || ||||| Sbjct 7990 ATCCAAGGTAATGGTTTTTCCCGTCAAAGTTTTGACAAAGATTTGCAT 8037 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||||||| || || ||||| | || || |||||||||||||||||||| || Sbjct 8267 CCACCACGCAAACGTAGGACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCACTG 8326 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || || || || ||||| || | || || || |||||||| || ||| Sbjct 8327 AGAGTGCGGCCATCTTCGAGTTGTTTGCCAGCAAAAATCAATCGTTGCTGGTCTGGTGGG 8386 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| || || ||| || || || | | || | | || | | |||| Sbjct 8387 ATGCCTTCCTTATCTTGGATCTTTTGTTTTACGTTATCAATCGAGTCCGAAGGTTCGACA 8446 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| || || ||||| | || ||||||||||| ||||| Sbjct 8447 TCCAATGTAATTGTCTTGCCGGTCAACGTCTTTACGAAAATTTGCAT 8493 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || ||||||| |||| ||||| || || ||||| ||||||||||| || || Sbjct 8039 CCACCACGTAAACGCAAGACTAGATGTAGAGTAGATTCCTTCTGAATGTTGTAGTCACTG 8098 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | | || || || || || ||||| || | |||||||| || || || |||||| Sbjct 8099 AGAGAACGACCATCTTCGAGTTGTTTGCCAGCAAAAATTAAACGTTGTTGATCTGGAGGG 8158 Query 131128 ATTCCTTCTTTGTC 131141 || ||||||||||| Sbjct 8159 ATGCCTTCTTTGTC 8172 >seq5008 Length=14815 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || ||||| | || || || ||||| ||||||||||||||| Sbjct 6448 CCACCACGAAGACGAAGGACCAAATGAAGAGTAGATTCTTTTTGGATGTTGTAATCGCTC 6389 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || || || |||||||| |||| ||||| || || || ||||| Sbjct 6388 AAAGTACGTCCATCTTCAAGTTGTTTGCCTGCAAAGATCAAACGTTGTTGATCTGGAGGA 6329 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| || || ||||||| | || | | ||| | | |||| Sbjct 6328 ATGCCTTCCTTGTCTTGAATCTTTTGCTTGACATTATCAATCGAATCCGAAGGTTCGACA 6269 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || || || | || || ||||| |||||||| Sbjct 6268 TCCAACGTGATGGTCTTGCCTGTCAATGTCTTGACGAAGATCTGCAT 6222 >seq419 Length=23932 Score = 98.7 bits (108), Expect = 9e-16 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||||||| || || ||||| | || || |||||||| || ||||||||||| Sbjct 23057 GCCACCACGCAAACGAAGAACCAAATGCAATGTGGATTCCTTTTGGATATTGTAATCGCT 22998 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||| || || || || |||||||| || |||| | ||| || || || ||||| Sbjct 22997 CAGGGTACGACCATCTTCGAGTTGCTTGCCAGCAAAGATAAGACGTTGTTGATCTGGAGG 22938 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGA 131158 || ||||| || || || || ||||||| Sbjct 22937 AATGCCTTCCTTATCTTGAATCTTTTGCTTGA 22906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471981334446720