Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq2584 255 7e-63 seq224 230 3e-55 >seq2584 Length=5567 Score = 255 bits (282), Expect = 7e-63 Identities = 437/627 (70%), Gaps = 13/627 (2%) Strand=Plus/Plus Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712 |||| | || || || || || || |||||||| || | | ||| | |||||| |||| Sbjct 3227 ACATGAGGCAGGCAAAGTCACAATGAAGACCCTCATCACGAGAAATAAGTTCGTTCGAAA 3286 Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAG 32772 | | | || ||||| | ||||| || || |||||||| || || ||||||||| | Sbjct 3287 AGCTTAAACCAGGCATCAAACCACGTTTCTTGAGCCAAAAGATCGAGCAAAATGATCCTG 3346 Query 32773 AAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGT 32832 |||||||||| ||||| || || |||||||| | || | ||| |||| | || | | Sbjct 3347 AAAAGAAAATACCTTCAACAGCAGCAAAGGCTACAATACGTTCTGCATACGCAGCAATTT 3406 Query 32833 ---CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 32889 ||| ||| || ||||||| | || || || ||||||||| || || || | Sbjct 3407 TGCCATTGCACCATTTAAGAGCCCATTTAGCTTTACGTTGTACACAAGGAATCGTATCAA 3466 Query 32890 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCA--AAAG 32947 |||| | || | | | |||||| | | || || | ||| |||||||| | || | Sbjct 3467 TAGCCCTCAAAACACGATCTTTTTCCACAATGTCCTTGATATAAGTATCAATGAGCAACG 3526 Query 32948 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGC 33007 | || || ||| |||||||| ||||| || || ||||||||||| || || |||||||| Sbjct 3527 AATAAAC--TTCTGAATGAATATTTTCGATAGCAATTTGAAATCCATAAAAACATCTAGC 3584 Query 33008 CTC-GGTAATCTGTACTTC--TGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCC 33064 || |||| | |||||||| || | ||| || | || ||||||||||| || || || Sbjct 3585 TTCAGGTACT-TGTACTTCATTGGAAAAATTCATG--GCCAAATTTTCATTTACAATACC 3641 Query 33065 GTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAG 33124 || ||||||||||| ||||||||||| | ||||| || ||| | || || Sbjct 3642 ATCCGATGCTGCAAAAAATGCCAATACATGGGTAATAAAGAATCGTTCATTGTCCGTAAG 3701 Query 33125 TTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGC 33184 ||| ||||||| || ||||| | | ||| | |||||| | |||||||| || Sbjct 3702 TTTTGTCCAATCTTTCATATCATGGACAAGATCTAATTCTTCTGCAGTCCAAAAACTAGC 3761 Query 33185 CTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCT 33244 || || || |||||||| | ||| | || | |||||| ||||||| ||||||| Sbjct 3762 TTCAGCTTTCTTATACATTTCCCACACATCTGTGTGTTGAATAGGAAAAAGCACAAATCG 3821 Query 33245 ATTTGGATTTTTTGCAAGGATTGGTTC 33271 |||||| |||| | | || |||||| Sbjct 3822 ATTTGGGTTTTCCGATAAGAATGGTTC 3848 >seq224 Length=84125 Score = 230 bits (254), Expect = 3e-55 Identities = 1174/1844 (64%), Gaps = 61/1844 (3%) Strand=Plus/Minus Query 61882 ACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGT 61941 |||||| |||||||| || || || || || | |||| ||||||||||||| || Sbjct 28856 ACGTAGGTAGTACATGCCTGTCTTAAGTCCACGTTTCCAAGCGTAAAAATGCATCGAGGT 28797 Query 61942 TAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAA 62001 |||||| ||| ||||| || ||||||| |||||| ||||| |||| ||| || Sbjct 28796 GAGTTTGCTCACACTTGGATCGGCAATATGGACATTCATCGATTGCGATTGACAGATAAA 28737 Query 62002 GGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTT 62061 || || | || ||||| | | || ||| ||||||| || |||||| | || || Sbjct 28736 TGCACCACGATCAGCAGCAAGATCTAAAATAATCTTTTGCTTAACTTCCCATACTGTCTT 28677 Query 62062 ATAAACTCGCTTAATATCTTCTGGAAGGTTTG-TA--TTCTGAATGGATCCACCATCTGC 62118 |||| || ||| || ||||| || || || |||| |||| ||| Sbjct 28676 GTAAATGTCTTTGATACGTTTTGGAATACTTAATACGTTTTGAACACTACCACGATCATG 28617 Query 62119 CATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAA---CTCTAAG 62175 | ||| ||| | ||| ||||||| | | | | || || || | | Sbjct 28616 TAAAATTTGATTACGTACTTCAGCATTCCAAAGA---CCCAAAGATATAAGTTCTTTCAT 28560 Query 62176 GAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACT 62235 | || || || | | |||||| |||| | || | |||| ||| || || Sbjct 28559 CAAATATTTGTTGACAATTGTAAATTCACCAGCAAGAACACGACGAGAGTACATGTTGGA 28500 Query 62236 GGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCAT 62295 ||| | ||||| | || ||||| || || | |||||| ||||| || || || ||||| Sbjct 28499 TGTAAATGGTTCAATTGATTCATTGTTGCCAAGAATTTGTGCAGTAGAAGCTGTTGGCAT 28440 Query 62296 AGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGT 62353 || || | ||| | | ||| | || ||| ||| | | | || | |||| || | Sbjct 28439 TGGGGCAAGCAAAAGAGAATTGCGAATACC--ATGCTTGGCCACTTGAGCTTTGAGTGTA 28382 Query 62354 TCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTA 62413 |||| | |||||||| | || ||| ||| | ||||| || Sbjct 28381 GCCCAGTCCCAAAGATTTGTTGGAGAAACACCCCACATATCATATTGGAAGATACCTTTG 28322 Query 62414 CTGGCGTACGATCCTACATATGTATCGTATGGTCC---TTCCTTCTCAGCTAGTTCAC-- 62468 || | || ||| |||| || |||||||| || ||| || || | | || Sbjct 28321 CTTACAGGAGAGCCTGCATACGTTTCGTATGGACCAAATTCTTTGGCAATT--TCCATGG 28264 Query 62469 AACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGAT-CTTGC 62527 | | || ||||| |||| || ||||| ||||| | |||| || | |||| Sbjct 28263 ATGTTTCCATGGATGCATGGTAA---ATAGTTTCAAAGATTTGAATATTGAGTTTCTTG- 28208 Query 62528 GCTTCCAGGCTAT-CAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAAC 62586 ||||| || || |||| |||||| | ||||||||| || || || | |||||||| Sbjct 28207 GCTTC-AGCAGATTCAAAAGGATAACCCATGAGAATAAAGGCATCAGCAAGCCCTTGAAC 28149 Query 62587 ACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATA 62646 ||||||||| ||||| | ||| | | |||| || ||||||| |||||| || || Sbjct 28148 ACCAATACCAATAGGACGATGACGCATATTGCTTCGTTTAGCTTCTTCAATAGGGTAGTA 28089 Query 62647 ATTAATATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAG 62703 || || || || | ||| || | ||| | | |||||| ||| | | | || Sbjct 28088 GTTGATTTCAATCACTTTGTTTAAATTGCGAGTAACAATT---TTGGTGATTTTATGCAA 28032 Query 62704 TTTGAGAAAATCAAATCGCCCATCTATTACAAACATGTTCAATG--CAACAGATGCCAGA 62761 ||| ||| |||||| ||||| | ||||| | || || | ||| ||||||| | Sbjct 28031 ATTGGTAAAGTCAAATACACCATCATTGACAAA--TTTTGAAAGAGCAATCGATGCCAAA 27974 Query 62762 TTACAAACGGCTACCTCAT--TAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTAC 62819 || || || || || |||| | || | | ||||| || | ||| ||| | |||| Sbjct 27973 TTGCACACAGCCACTTCATCTTTGCTT--GTATATTCGATAACTTCACAGCACAAGTTAC 27916 Query 62820 TACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG---TTACACGCATCCTTAT 62876 | | || || || ||||| |||||||| || | |||| || || ||||| || | Sbjct 27915 TCGATTTAATAGTACCTAAGTTTTGTTGGTT---CGATTTGGAATTGCAAGCATCTTTGT 27859 Query 62877 AAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC 62936 | | || |||| ||||||||||| || ||||| || | ||| || ||| | Sbjct 27858 ACAACATATATGGTGTACCAGTTTCGATTTGAGAATCGAGAATGGCAAACCATAATTGCT 27799 Query 62937 GAGCCTTTATTATAGATTTGTATCTCTT--TTCTCTTTCGTATAGTGTATACAATCGTTC 62994 ||||||| ||| | ||| | | | ||| ||| || || ||||| ||| Sbjct 27798 GAGCCTTGATTGTC--TTTCGAGCACGACCTTCAGATTCAAATTTGGTGTACAAAGCTTC 27741 Query 62995 GAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGAC-- 63052 || || | ||||| || | || |||| | ||||| || || | || ||| Sbjct 27740 AAATTCCTTGCCCCAGCAATCTTGCAAGCCAGAAGCTTCATTTGGGCAAA--AAAGACTC 27683 Query 63053 CACTCTCCGTCATCCTTC-ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63111 || || || | | |||| || || |||||||| | |||||| ||||| | || ||| Sbjct 27682 CAATCACCATT-TGCTTCGACACGCTTCATAAACAAATCAGGGATCCACAAGGCATAAAA 27624 Query 63112 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63171 ||||| | | | ||| || || || ||| || || ||||| | ||| | | Sbjct 27623 GAGATCACGAGCACGGTGTAGTTCATTGCCATGATTTTTCTTGAGATCCAAAAACTCAAA 27564 Query 63172 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63231 |||||||| |||||| ||||| | || ||||| | || || || || || Sbjct 27563 AATATCAGCATGCCATGGTTCAAGATACATGGCAAACGAACCCTTACGCTTACCACCACC 27504 Query 63232 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 63291 || || | || | |||||| | ||| | |||| | ||| ||||| ||||| || || Sbjct 27503 TTGGTCAACATAGCGAGCGGTATCATTGAATACTCGAAGCATGGGAATGATACCGTTCGA 27444 Query 63292 TGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACC 63351 || |||||||| || ||||| || | | |||||||| || | || Sbjct 27443 TGAGCCATTGGTACCACGAATATAACTATTTGTTGAGCGAATATTGTGGATATTCACGCC 27384 Query 63352 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTC 63411 || || || ||| ||| || || | || ||| |||| || |||||||| || || || Sbjct 27383 GATACCACCAGCCCATTTGGAAATACAAGCACATTGTTTCAAAGTATCATAAATACCTTC 27324 Query 63412 TATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCC 63471 || ||| ||| ||||| | ||||| || |||| ||| |||| ||| || Sbjct 27323 AATCGAATCGTCCTTCATGGCCAAAAGAAAGCAAGACGACAATTGTGGACGTGGAGTACC 27264 Query 63472 CGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG-TACG 63530 ||||| || | ||||| | ||| || || || | ||| | | | ||| || | Sbjct 27263 AGCATTGAAAAGAGTAGGTGTAGCATGGGTGAAGAACATTTGACTCA-TGTATTCATAAG 27205 Query 63531 TCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGT 63590 | || | |||| | ||||| || |||||| || || || |||||||| | ||||| Sbjct 27204 TGTCCAAAGCTCCAGCAATATCTTCTTTATGAATACCAACAGCAACACGCATGATCATGT 27145 Query 63591 GCTGAGGTCTTTCAACGATCTTGTTG-TTTATTTTCAACAAGTAGGATTTTTCCAAAGTT 63649 ||||||||| |||| | | ||| | |||| || | ||| ||| |||||||||||| Sbjct 27144 GCTGAGGTCGTTCA-CAAACTTTTCCATTTACTTGAAGCAAATAGCTCTTTTCCAAAGTT 27086 Query 63650 TTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 ||||| ||||| || | ||| ||| || || || ||||||| Sbjct 27085 TTAAATCCAAAGTAATCATATTCAAAATCACGATCAGAAATAAT 27042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633589760506800