Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq2092 140 3e-28 seq419 136 3e-27 seq2232 131 1e-25 seq5008 122 8e-23 seq580 120 3e-22 >seq2092 Length=13256 Score = 140 bits (154), Expect = 3e-28 Identities = 152/202 (75%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 24994 GAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGT 25053 |||| ||||| || || |||||||| ||||| ||||| |||||||| | || || || Sbjct 11690 GAACGATGCAGATCTTCGTAAAGACCTTGACGGGTAAGACCATCACATTGGATGTCGAAC 11749 Query 25054 CGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 | || || | || || | ||||||||||| ||||| ||||| ||||| || | Sbjct 11750 CTTCGGATTCGATTGATAATGTCAAGCAAAAAATTCAAGACAAGGAAGGCATTCCTCCAG 11809 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 | ||||| || | || ||||||||||| ||| | ||||||| ||||||| || |||||| Sbjct 11810 ATCAACAACGTTTGATCTTTGCCGGCAAGCAACTCGAAGATGGTCGCACTTTGAGCGATT 11869 Query 25174 ACAATATTCAAAAAGAATCCAC 25195 |||| || ||||| ||||| || Sbjct 11870 ACAACATCCAAAAGGAATCGAC 11891 >seq419 Length=23932 Score = 136 bits (150), Expect = 3e-27 Identities = 147/193 (76%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| ||||| |||||| |||| || |||| || || | || Sbjct 23742 ATGCAAATCTTTGTCAAGACATTGACGGGTAAAACCATTACCCTCGATGTCGAACCTTCG 23801 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || |||| || || || |||||||| ||| ||||| ||||| ||||||||||| | Sbjct 23802 GATTCTATTGA--CAATGTCAAGCAAAAGATCCAAGACAAGGAAGGCATTCCACCTGATC 23859 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| || | || ||||||||||| ||| | ||||||| |||||| | |||| |||| Sbjct 23860 AACAACGTCTCATCTTTGCCGGCAAGCAACTCGAAGATGGCCGCACTCTCAGCGACTACA 23919 Query 25177 ATATTCAAAAAGA 25189 | || ||||| || Sbjct 23920 ACATCCAAAAGGA 23932 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||||||||| ||||||||||| | |||||| | || || || | || Sbjct 23286 ATGCAAATTTTTGTAAAGACGTTGACCGGTAAGACGATCACACTTGACGTCGAACCTTCG 23345 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||| | || || | || ||||| ||| ||||| ||||| ||||| || || ||| Sbjct 23346 GACTCCATTGATAATGTTAAACAAAAGATCCAAGACAAGGAAGGCATTCCTCCAGATCAA 23405 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | ||||||||||| |||||| | ||||||| || ||| | |||| ||||| Sbjct 23406 CAACGCCTCATTTTTGCCGGTAAACAACTCGAAGATGGCCGTACTTTAAGCGACTACAAC 23465 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGT 25207 || ||||| ||||| || | ||||| || Sbjct 23466 ATCCAAAAGGAATCTACATTGCATTTGGT 23494 Score = 131 bits (144), Expect = 1e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||||||||||||||| | |||||| | || || || | || Sbjct 23058 ATGCAAATCTTTGTTAAGACTTTGACCGGTAAGACGATCACACTTGACGTCGAACCATCG 23117 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||| | ||||| |||| ||||| || || || ||||| ||||| || || ||| Sbjct 23118 GACTCCATCGACAACGTGAAACAAAAGATTCAAGATAAGGAAGGCATTCCTCCAGATCAA 23177 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || |||| ||||| || ||||| | ||||| | || ||| || |||| |||||| Sbjct 23178 CAACGTCTTATCTTTGCTGGTAAACAGCTCGAAGACGGACGAACTTTGAGCGACTACAAT 23237 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| ||||| || | ||||| || || Sbjct 23238 ATCCAAAAGGAATCTACATTGCATTTGGTCCT 23269 Score = 129 bits (142), Expect = 5e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 ||| |||||||| ||||| ||||| | || || || | ||||| |||| || ||| | Sbjct 22826 AACCATGCAAATCTTTGTCAAGACACTCACGGGGAAGACAATCACGCTCGATGTTGAGCC 22885 Query 25055 GTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || ||| | || || | |||||||| || || || ||||| ||||| || || Sbjct 22886 ATCGGACTCCATTGACAACGTCAAGCAAAAGATTCAAGATAAGGAAGGCATTCCTCCAGA 22945 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||| || |||| ||||| ||||| ||| | ||||||| ||| || || ||||||| Sbjct 22946 TCAACAACGTCTTATCTTTGCTGGCAAGCAACTCGAAGATGGTCGTACCCTGAGCGATTA 23005 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||| ||||| |||||||| | ||||| || || Sbjct 23006 CAATATCCAAAAGGAATCCACATTGCATTTGGTTCT 23041 >seq2232 Length=15861 Score = 131 bits (144), Expect = 1e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||| || || ||||||| | || || ||| | || Sbjct 396 ATGCAGATTTTCGTCAAGACATTGACTGGCAAGACCATCACGTTGGATGTAGAGCCTTCG 455 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||| | || || | |||||||| ||| ||||| ||||| ||||| || || ||| Sbjct 456 GACTCGATTGACAACGTCAAGCAAAAGATCCAGGACAAGGAAGGTATTCCTCCAGATCAA 515 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || ||||||||||| ||| | ||||||| ||| ||| || |||||||||| Sbjct 516 CAACGTTTGATCTTTGCCGGCAAGCAACTCGAAGATGGTCGTACTTTGAGCGATTACAAC 575 Query 25179 ATTCAAAAAGAATCCAC 25195 |||||||| ||||| || Sbjct 576 ATTCAAAAGGAATCGAC 592 >seq5008 Length=14815 Score = 122 bits (134), Expect = 8e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||| || || ||||||| | || || || | || Sbjct 6222 ATGCAGATCTTCGTCAAGACATTGACAGGCAAGACCATCACGTTGGATGTCGAACCTTCG 6281 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || | || || | |||||||| || ||||| ||||| ||||| || || ||| Sbjct 6282 GATTCGATTGATAATGTCAAGCAAAAGATTCAAGACAAGGAAGGCATTCCTCCAGATCAA 6341 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || ||||| ||||||||| | ||||||| || ||| || |||||||||| Sbjct 6342 CAACGTTTGATCTTTGCAGGCAAACAACTTGAAGATGGACGTACTTTGAGCGATTACAAC 6401 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||||||||| || || ||||| || || Sbjct 6402 ATCCAAAAAGAATCTACTCTTCATTTGGTCCT 6433 >seq580 Length=37562 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| ||||| || || | || ||| | || ||||| | || Sbjct 8265 ATGCAAATTTTCGTCAAGACATTGACTGGAAAGACTATTACACTTGACGTGGAACCTTCA 8206 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||| | || || |||| ||||| || ||||||||||| || || || || ||| Sbjct 8205 GACTCAATTGATAATGTGAAACAAAAGATTCAAGACAAAGAAGGCATCCCTCCAGATCAA 8146 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | |||||||| ||||||||| | ||||||| ||| || | | || ||||| Sbjct 8145 CAACGTTTAATTTTTGCTGGCAAACAACTCGAAGATGGTCGTTCTCTCAGTGACTACAAC 8086 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGT 25207 ||||| || ||||| || |||||| |||| Sbjct 8085 ATTCAGAAGGAATCTACTCTACATCTAGT 8057 Score = 116 bits (128), Expect = 3e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| | ||||| || | || || | || ||||| | || Sbjct 8721 ATGCAAATCTTTGTCAAGACACTCACCGGAAAGACAATTACGTTGGACGTGGAACCTTCG 8662 Query 25059 GACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||| | || || | || | ||||||||||| ||||| ||||| ||||| || || || Sbjct 8661 GACTCGATTGA-TAACGTCAAGCAAAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCA 8603 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||| ||||||||||| ||||||| || ||| | | || ||||| Sbjct 8602 ACAACGTTTGATCTTTGCTGGCAAACAATTGGAAGATGGACGTACTCTTAGTGACTACAA 8543 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTG 25208 ||| ||||| ||||| || | || || ||| Sbjct 8542 TATCCAAAAGGAATCGACCTTGCACTTGGTG 8512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433299835440395