Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq2584 244 1e-59 >seq2584 Length=5567 Score = 244 bits (270), Expect = 1e-59 Identities = 427/614 (70%), Gaps = 12/614 (2%) Strand=Plus/Plus Query 93083 TACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTG 93142 ||||| | ||| |||||||| ||| | ||| || || || || || | || || Sbjct 3226 TACATGAGGCAGGCAAAGTCACAATGAAGACCCTCATCACGAGAAATAAGTTCGTTCGAA 3285 Query 93143 AATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTA-CC 93201 || ||||||| || | || || ||||||||||||||||| || || |||||| | || Sbjct 3286 AAGCTTAAACCAGGCATCAAACCACGTTTCTTGAGCCAAAAGATCGA-GCAAAATGATCC 3344 Query 93202 AGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGA 93261 ||||| || |||||||| || || ||||| || ||||||||||| ||| | || | Sbjct 3345 TGAAAAGAAAATACCTTCAACAGCAGCAAAGGCTACAATACGTTCTGCATACGCAGC--A 3402 Query 93262 ATTACTGC---TGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGT 93318 ||| ||| || |||||| | |||||| | ||||| | | |||||| | || Sbjct 3403 ATTT-TGCCATTGCACCATTTAAGAGCCCATTTAGCTTTACGTTGTACACAAGGAATCGT 3461 Query 93319 TTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGT--ATGTATGTATCGATT 93376 || ||||| | || | |||| || | ||| || | || || ||||| || Sbjct 3462 ATCAATAGCCCTCAAAACACGATCTTTTTCCAC--AATGTCCTTGATATAAGTATCAATG 3519 Query 93377 AACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACAT 93436 | || ||||| | ||| ||||| | ||| || || |||||||| ||||| || |||||| Sbjct 3520 AGCAACGAATAAACTTCTGAATGAATATTTTCGATAGCAATTTGAAATCCATAAAAACAT 3579 Query 93437 CTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATA 93496 |||||||| | | || ||||| | ||||| || | | ||||||||| || ||| Sbjct 3580 CTAGCTTCAGGTACTTGTACTTCATTGGAAAAATTCATGGCCAAATTTTCATTTACAATA 3639 Query 93497 CCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTA 93556 ||||| |||||||||||||| ||||||| ||| | ||||| | |||| || || Sbjct 3640 CCATCCGATGCTGCAAAAAATGCCAATACATGGGTAATAAAGAATCGTTCATTGTCCGTA 3699 Query 93557 AGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGAT 93616 || || |||||| | ||| | |||||| | |||||| |||||||||| Sbjct 3700 AGTTTTGTCCAATCTTTCATATCATGGACAAGATCTAATTCTTCTGCAGTCCAAAAACTA 3759 Query 93617 GCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAA 93676 ||||| ||||| || ||||| ||||| | ||| | |||||| ||||| | ||||| Sbjct 3760 GCTTCAGCTTTCTTATACATTTCCCACACATCTGTGTGTTGAATAGGAAAAAGCACAAAT 3819 Query 93677 CGATTAGGGTTATC 93690 ||||| ||||| || Sbjct 3820 CGATTTGGGTTTTC 3833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556823678266920