Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq419 154 1e-32 seq5008 132 4e-26 seq2092 129 5e-25 seq580 127 2e-24 seq2232 109 5e-19 seq224 105 6e-18 >seq419 Length=23932 Score = 154 bits (170), Expect = 1e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| || || || |||||||| ||| |||| ||||| || ||| | | Sbjct 23286 ATGCAAATTTTTGTAAAGACGTTGACCGGTAAGACGATCACACTTGACGTCGAACCTTCG 23345 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | |||||||| || ||||||||||| || ||||| || |||||| Sbjct 23346 GACTCCATTGATAATGTTAAACAAAAGATCCAAGACAAGGAAGGCATTCCTCCAGATCAA 23405 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| || || |||||||| ||||| | || ||| ||| || | ||| |||||| Sbjct 23406 CAACGCCTCATTTTTGCCGGTAAACAACTCGAAGATGGCCGTACTTTAAGCGACTACAAC 23465 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||| ||||| || | ||||| || ||||| | || || ||| Sbjct 23466 ATCCAAAAGGAATCTACATTGCATTTGGTCTTGCGTCTTCGTGGTGGT 23513 Score = 152 bits (168), Expect = 4e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| |||||||| ||||| |||||||| ||| |||| ||||| || ||| | | Sbjct 23058 ATGCAAATCTTTGTTAAGACTTTGACCGGTAAGACGATCACACTTGACGTCGAACCATCG 23117 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | |||||||| |||||||| ||||| || ||||| || |||||| Sbjct 23118 GACTCCATCGACAACGTGAAACAAAAGATTCAAGATAAGGAAGGCATTCCTCCAGATCAA 23177 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||||||||| ||||| || |||||| | || || || || | ||| ||||| Sbjct 23178 CAACGTCTTATCTTTGCTGGTAAACAGCTCGAAGACGGACGAACTTTGAGCGACTACAAT 23237 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || ||||| ||||| || | ||||| || | || ||||| || || Sbjct 23238 ATCCAAAAGGAATCTACATTGCATTTGGTCCTCCGTTTGCGTGGTGG 23284 Score = 141 bits (156), Expect = 8e-29 Identities = 146/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || || || |||||||| | || || || || ||| | | Sbjct 23742 ATGCAAATCTTTGTCAAGACATTGACGGGTAAAACCATTACCCTCGATGTCGAACCTTCG 23801 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||| | | ||| || |||| ||||| || ||||||||||| || |||||||| |||||| Sbjct 23802 GATTCTATTGACAATGTCAAGCAAAAGATCCAAGACAAGGAAGGCATTCCACCTGATCAA 23861 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || ||||||||||| || | || ||| |||||| || ||| |||||| Sbjct 23862 CAACGTCTCATCTTTGCCGGCAAGCAACTCGAAGATGGCCGCACTCTCAGCGACTACAAC 23921 Query 22399 ATTCAAAAAGA 22409 || ||||| || Sbjct 23922 ATCCAAAAGGA 23932 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || | || || || || |||| || || || || | | Sbjct 22830 ATGCAAATCTTTGTCAAGACACTCACGGGGAAGACAATCACGCTCGATGTTGAGCCATCG 22889 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | |||| ||||| |||||||| ||||| || ||||| || |||||| Sbjct 22890 GACTCCATTGACAACGTCAAGCAAAAGATTCAAGATAAGGAAGGCATTCCTCCAGATCAA 22949 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||||||||| ||||| ||||| || | || ||| || ||| | ||||||||| Sbjct 22950 CAACGTCTTATCTTTGCTGGCAAGCAACTCGAAGATGGTCGTACCCTGAGCGATTACAAT 23009 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || ||||| |||||||| | ||||| ||| | || ||||| || || Sbjct 23010 ATCCAAAAGGAATCCACATTGCATTTGGTTCTTCGTTTGCGTGGTGG 23056 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || || || ||||| || | ||||| || || ||| | | Sbjct 23514 ATGCAAATCTTCGTGAAGACATTGACGGGTAAGACCATTACTCTCGATGTCGAACCATCG 23573 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||| || | ||| | |||| ||||| |||||||||||||| || ||||| || |||||| Sbjct 23574 GATTCCATTGACAACGTCAAGCAAAAGATTCAAGACAAGGAAGGCATTCCTCCAGATCAA 23633 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| || || ||||| || ||||| | || ||| ||||||| | || |||||| Sbjct 23634 CAACGCCTCATTTTTGCTGGTAAACAACTTGAAGATGGCCGCACCCTTAGTGACTACAAC 23693 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || ||||| ||||| || | || || || | || ||||| || || Sbjct 23694 ATCCAAAAGGAATCGACTCTTCACTTGGTCCTTCGTTTGCGTGGTGG 23740 >seq5008 Length=14815 Score = 132 bits (146), Expect = 4e-26 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 22210 TTTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTG 22269 |||||| ||||||| || || || || || || || || || || |||| | || || Sbjct 6213 TTTGTAGAGATGCAGATCTTCGTCAAGACATTGACAGGCAAGACCATCACGTTGGATGTC 6272 Query 22270 GAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCA 22329 ||| | | ||| | | || || |||| ||||| |||||||||||||| || ||||| Sbjct 6273 GAACCTTCGGATTCGATTGATAATGTCAAGCAAAAGATTCAAGACAAGGAAGGCATTCCT 6332 Query 22330 CCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCC 22389 || |||||||||||| | || ||||| |||||||| | || ||| || || | | Sbjct 6333 CCAGATCAACAACGTTTGATCTTTGCAGGCAAACAACTTGAAGATGGACGTACTTTGAGC 6392 Query 22390 GATTACAACATTCAAAAAGAATCCACCATACATTTAGT 22427 ||||||||||| ||||||||||| || | ||||| || Sbjct 6393 GATTACAACATCCAAAAAGAATCTACTCTTCATTTGGT 6430 >seq2092 Length=13256 Score = 129 bits (142), Expect = 5e-25 Identities = 149/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 || |||||| || || || || || || || ||||| || |||| | || || ||| | Sbjct 11691 AACGATGCAGATCTTCGTAAAGACCTTGACGGGTAAGACCATCACATTGGATGTCGAACC 11750 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | ||| | | || || |||| |||||||||||||||||||| || ||||| || || Sbjct 11751 TTCGGATTCGATTGATAATGTCAAGCAAAAAATTCAAGACAAGGAAGGCATTCCTCCAGA 11810 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 |||||||||| | || ||||||||||| || | || ||| ||||| | |||||| Sbjct 11811 TCAACAACGTTTGATCTTTGCCGGCAAGCAACTCGAAGATGGTCGCACTTTGAGCGATTA 11870 Query 22395 CAACATTCAAAAAGAATCCAC 22415 |||||| ||||| ||||| || Sbjct 11871 CAACATCCAAAAGGAATCGAC 11891 >seq580 Length=37562 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || || || || || || || | || ||||| |||||| | | Sbjct 8265 ATGCAAATTTTCGTCAAGACATTGACTGGAAAGACTATTACACTTGACGTGGAACCTTCA 8206 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | || || | |||||||| ||||||||||| || || || || || |||||| Sbjct 8205 GACTCAATTGATAATGTGAAACAAAAGATTCAAGACAAAGAAGGCATCCCTCCAGATCAA 8146 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||| |||||||| | || ||| || | || || |||||| Sbjct 8145 CAACGTTTAATTTTTGCTGGCAAACAACTCGAAGATGGTCGTTCTCTCAGTGACTACAAC 8086 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || ||||| || ||||| |||| ||||| || || || ||| Sbjct 8085 ATTCAGAAGGAATCTACTCTACATCTAGTCTTGCGTTTACGTGGTGGT 8038 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || | ||||| || || | || | || |||||| | | Sbjct 8721 ATGCAAATCTTTGTCAAGACACTCACCGGAAAGACAATTACGTTGGACGTGGAACCTTCG 8662 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | || | |||| |||||||||||||||||||| |||||||| || |||||| Sbjct 8661 GACTCGATTGATAACGTCAAGCAAAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAA 8602 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||| |||||||| || || ||| || || | || ||||| Sbjct 8601 CAACGTTTGATCTTTGCTGGCAAACAATTGGAAGATGGACGTACTCTTAGTGACTACAAT 8542 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || ||||| ||||| ||| | || || || ||||| || || || || Sbjct 8541 ATCCAAAAGGAATCGACCTTGCACTTGGTGTTGCGTTTACGAGGCGG 8495 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||||||||| || || || || ||||| || || | || | || || ||| | | Sbjct 8494 GATGCAAATTTTCGTAAAGACGTTGACCGGCAAGACAATTACATTGGATGTCGAACCTTC 8435 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || | | || | | |||||||| || ||||| ||||| || || ||||| || || Sbjct 8434 GGACTCGATTGATAACGTAAAACAAAAGATCCAAGATAAGGAAGGCATCCCACCAGACCA 8375 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 ||||| | || ||||| |||||||| | || ||| |||||| || |||||||| Sbjct 8374 GCAACGATTGATTTTTGCTGGCAAACAACTCGAAGATGGCCGCACTCTCAGTGATTACAA 8315 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||||| |||||||| | ||||| || | || ||||| || ||| Sbjct 8314 CATTCAAAAGGAATCCACACTTCATTTGGTCCTACGTTTGCGTGGTGGT 8266 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| |||||||| || || ||||| | || | || || ||| | || Sbjct 8037 ATGCAAATCTTTGTCAAAACTTTGACGGGAAAAACCATTACCTTGGATGTTGAACCATCC 7978 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | || || |||| ||||| || ||||||||||| || || || || |||||| Sbjct 7977 GACTCGATTGATAATGTCAAGCAAAAGATCCAAGACAAGGAAGGCATCCCTCCGGATCAA 7918 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || || || || ||||| | || || || || | || |||||| Sbjct 7917 CAACGTTTGATTTTCGCTGGTAAACAACTTGAAGACGGTCGTACATTAAGTGACTACAAC 7858 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 |||||||| ||||| || | || || || ||||| | || ||||| Sbjct 7857 ATTCAAAAGGAATCTACTCTCCACTTGGTATTGCGTCTTCGTGGAGG 7811 >seq2232 Length=15861 Score = 109 bits (120), Expect = 5e-19 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| ||||| || || || || || || || || |||| | || || || | Sbjct 393 AATATGCAGATTTTCGTCAAGACATTGACTGGCAAGACCATCACGTTGGATGTAGAGCCT 452 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || | | ||| | |||| ||||| || || |||||||| |||||||| || ||| Sbjct 453 TCGGACTCGATTGACAACGTCAAGCAAAAGATCCAGGACAAGGAAGGTATTCCTCCAGAT 512 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 ||||||||| | || ||||||||||| || | || ||| || || | ||||||| Sbjct 513 CAACAACGTTTGATCTTTGCCGGCAAGCAACTCGAAGATGGTCGTACTTTGAGCGATTAC 572 Query 22396 AACATTCAAAAAGAATCCAC 22415 ||||||||||| ||||| || Sbjct 573 AACATTCAAAAGGAATCGAC 592 >seq224 Length=84125 Score = 105 bits (116), Expect = 6e-18 Identities = 424/655 (65%), Gaps = 37/655 (6%) Strand=Plus/Minus Query 129580 GGATAGTAGTTGATGTCTATAATTTTGTTTAAATTCTTGACCACAATTTTCGTTACGTAT 129639 || ||||||||||| || || | |||||||||||| |||||||| || | | Sbjct 28096 GGGTAGTAGTTGATTTCAATCACTTTGTTTAAATTGCGAGTAACAATTTTGGTGA----T 28041 Query 129640 TTTAACATTTCAAAATTGTAC--TCGCCTACATCGATGTCGACAAATTGATTGACACA-- 129695 |||| | |||| | ||| || |||| | | |||||||| |||| | | Sbjct 28040 TTTA----TGCAAATTGGTAAAGTCAAATACACCATCATTGACAAATT--TTGAAAGAGC 27987 Query 129696 AATCGAGGCCAAATTGCAGACGGCACTTTCGTTTTTGTCACTGTACTCGACAATTTCGGC 129755 |||||| ||||||||||| || || ||| | |||| | || |||| || ||| Sbjct 27986 AATCGATGCCAAATTGCACACAGCCACTTCATCTTTGCTTGTATATTCGATAACTTCACA 27927 Query 129756 GCACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGATTACTTTTCATGTTGCAAGC 129815 |||||| ||||| |||||| || || || | | ||| || ||| |||||||| Sbjct 27926 GCACAAGTTACTCGATTTAATAGTACCTAAGTTTTGTTGGTTCGATTTGGAATTGCAAGC 27867 Query 129816 ATCTTTGTACATCATGTACGGCGTGCCCGTTTCGACTTGCGTTTCGACAATGGTCCTGAA 129875 ||||||||||| ||| || || || || ||||||| ||| | |||| ||||| | Sbjct 27866 ATCTTTGTACAACATATATGGTGTACCAGTTTCGATTTGAGAATCGAGAATGGCAAACCA 27807 Query 129876 CAAGTCTCGAGCCTTGATCTGTCTT------ACAAATTTGCCACATTTCTCGTATGCCAC 129929 || | |||||||||| |||||| || | || || || || || Sbjct 27806 TAATTGCTGAGCCTTGAT-TGTCTTTCGAGCACGACCTT--CAGAT---TCAAATTTGGT 27753 Query 129930 ATACAGTTGTTCAAATT-CTGAGCCGTGTACGGTGTCGAGCAACGGCGATTCACGCGGAC 129988 |||| |||||||| || || | | | | ||| | | | |||| || | Sbjct 27752 GTACAAAGCTTCAAATTCCTTGCCCCAGCAATCTTGCAAGCCA-GAAGCTTCATTTGGGC 27694 Query 129989 ACATCAAACTCCACATTCCATCCGCTTCGACTCGTTTCATAAACAAATCGGGTACCCACA 130048 | | | |||||| |||| |||||||| || |||||||||||||| || | ||||| Sbjct 27693 AAAAAAGACTCCAATCACCATTTGCTTCGACACGCTTCATAAACAAATCAGGGATCCACA 27634 Query 130049 GGGCGTACAACAAATCTCGCGC---TTTTCTATCCTCGGCACCCATGTTACGTTTCAGTT 130105 ||| || || | ||| || || | | || | | || || || | || || | Sbjct 27633 AGGCATAAAAGAGATCACGAGCACGGTGTAGTTCATTGCCA-TGATTTTTC--TTGAGAT 27577 Query 130106 CAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACATAAATTGCCATTGCGCCCTTCC 130165 | | || || |||| || || ||||| ||||||| ||| || || | | ||||| | Sbjct 27576 CCAAAAACTCAAAAATATCAGCATGCCATGGTTCAAGATACATGGCAAACGAACCCTTAC 27517 Query 130166 GTTT---GCCCCCTTGGTCAACGTGGCGCACGGCATTGTTGTAGACTCGCAACAT 130217 | || || ||||||||||| | ||| ||| || ||| | ||||| | ||| Sbjct 27516 GCTTACCACCACCTTGGTCAACATAGCGAGCGGTATCATTGAATACTCGAAGCAT 27462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419700719385145