Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq2102 132 1e-25 seq1495 96.9 7e-15 >seq2102 Length=15428 Score = 132 bits (146), Expect = 1e-25 Identities = 660/1031 (64%), Gaps = 40/1031 (4%) Strand=Plus/Minus Query 279344 AGGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAA 279403 |||||| || || || || ||||| ||||| ||||| || ||||| | |||| |||| || Sbjct 11908 AGGTGATGACCTTTGCGATTGTGAATTCTCCCTCGCTTACGGTGGTATGATTTTGCTCAA 11849 Query 279404 CTCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGC 279463 | | ||||| | ||| ||||| || | || || ||||| |||||| || || Sbjct 11848 CAATGCCCGCATGAACCTCAAGAAGGGTCATCGCTACGGTCTTTGCGGTCCAAACGGTTG 11789 Query 279464 GGGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGC 279523 ||||| ||| || ||||| |||||||| || || || || |||||||| ||| | Sbjct 11788 TGGTAAATCCACCCTCATGCGTGCCATTGCCAATGGCCAACTTGAAGGATTCCCTTCCAA 11729 Query 279524 ATCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCCTCTCTCTCGGATAGCAC 279583 ||| | | ||| ||||| || || ||| || || | || | ||| | | Sbjct 11728 GGATGAACTTAAGACTGTGTACGTTGAACACAACCTCCAAGCCGAAGAAGCTGATCTCTC 11669 Query 279584 TGTGTTCGACTTCCTAACGTCTGACAATCAGGTTATGGAAATCAGCTCTCCTGAGGAAAT 279643 ||| | |||||| | | || | | | | ||| || ||| | ||||| | Sbjct 11668 TGTCGTTGACTTCGTCTTGAACGATCCTGATTTCAAGGATAT--GCTA-CGAAAGGAAGT 11612 Query 279644 CATCCAGAAACTGGAGG--CCAATGGTTT---TGATGAAA-GAATGCGTAATCTGCCAGT 279697 | | ||| ||| || ||| || ||||| | | | || || ||| | Sbjct 11611 C--CAAGACACTCTTTCTTCCGTTGGCTTCACTGATGCCATGCAAGCCCAAGCTGTC--- 11557 Query 279698 AGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCG 279757 || || |||| ||||| ||||| |||||||| | | |||| ||||| || | Sbjct 11556 -GGATCCTTGTCAGGTGGGTGGAAAATGAAGCTTGAATTGGCTCGTGCCATGCTTCAAAA 11498 Query 279758 TGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTG 279817 || ||| | | ||||||||||||| ||||||||| |||| | ||| || || || Sbjct 11497 GGCTGATATTTTGTTGCTTGATGAGCCTACCAACCACTTGGATGTCGTCAATGTTGCTTG 11438 Query 279818 GCTAGTGTCCTACCTAAC--CAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGAC 279875 ||||| |||| | || | | ||| || | | || || || ||||| ||||| Sbjct 11437 GCTAGAAAACTACTTGACTTCCATGGGAACCAT--TACCTCTCTTATCGTCTCGCACGAT 11380 Query 279876 TCTGGCTTCCTAGATGCCGTGTGCTCTGCCA---TCATTCACTATGAGCAAAATCTGAAG 279932 ||||| ||||| || | ||| || | ||| | |||||||| || | || | ||| Sbjct 11379 TCTGGTTTCCTTGA--CAATGT-CTGTACCAATATTATTCACTACGAAAAGAACCGCAAG 11323 Query 279933 CTCTCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCC 279992 ||| | | |||| ||| ||||| ||||| | | |||||||| || | Sbjct 11322 CTCAAGACTTATGTCGGTAACATGTCTAAGTTCGTTGAACTCCGCCCTGAAGCCAAGTCA 11263 Query 279993 TACTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAG 280052 || ||||| || | | || || | | | |||||||| || || || || | Sbjct 11262 TATTATGATTTGGATGCAGCTACAGTGGCATTCAAGTTCCCTGAACCTGGTTTCCTTGCT 11203 Query 280053 GGCATCAC-ATCAAAGG---ATCGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTTA 280108 | |||| | ||| || | || || || | | || ||| | | || Sbjct 11202 GATATCAAGAACAAGGGTAAACCGATCATTCGTTTGACCAATTG----CTCGTACACATA 11147 Query 280109 TCCCAATGGCCCCAA--CATCT-TCAGCAGTGT--CAACTCGCAGGTTTCTATGAACTCA 280163 || | || |||| |||| ||| || ||| | | || | || || || || Sbjct 11146 CCCTGGTTGCACCAAGCCATCGATCAACAATGTTTCGA-TCACTTGTG-CTTTGTCTTCT 11089 Query 280164 CGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACT 280223 || |||| |||||| || || || ||||| ||||| |||||| | || || | ||||| Sbjct 11088 CGTATTGCTGTCATCGGTCCAAACGGTGCTGGTAAATCTACCATGATTAAGATGTTGACT 11029 Query 280224 GGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTAC 280283 || || ||| || | ||||| || | || |||||||| || ||||| | || || Sbjct 11028 GGGGAAACCGAGCCTACTGAAGGTACTGTGTGGAAGCACCCTGCTATGCGTTTTGCCTAT 10969 Query 280284 GTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATAC 280343 |||||||| || |||||||||||||| || | ||| |||| || || | || |||||| Sbjct 10968 GTCGCTCAACATGCTTTCCACCACATTGAACAACACTTGGATATCTCTGCCAATCAATAC 10909 Query 280344 ATTCAGTGGCG 280354 ||||| ||||| Sbjct 10908 ATTCAATGGCG 10898 >seq1495 Length=520 Score = 96.9 bits (106), Expect = 7e-15 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 280161 TCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTG 280220 || || |||| |||||| || || |||||||| ||||| ||||| | |||||| | || Sbjct 52 TCTCGTATTGCTGTCATCGGTCCTAATGGTGCTGGTAAATCTACGATGATCAAAATGTTG 111 Query 280221 ACTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCT 280280 ||||| ||||| | | ||| || | | ||||| || || ||||| | || Sbjct 112 ACTGGTGAGACTGAACCAACTACTGGTACACTATGGAAACACCCTGCGATGCGCTTTGCA 171 Query 280281 TACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAA 280340 || || |||||||| ||||||||||| || || | || | || || | | ||||| Sbjct 172 TATGTGGCTCAGCATGCTTTCCACCATATTGAACAACATTTAGATATCTCAGCGAACCAG 231 Query 280341 TACATTCAGTGGCGCT 280356 |||||||| ||||||| Sbjct 232 TACATTCAATGGCGCT 247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027766568875053