Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq2092 152 9e-32 seq580 152 9e-32 seq5008 143 5e-29 seq2232 143 5e-29 seq419 143 5e-29 seq433 107 4e-18 seq1495 89.7 9e-13 >seq2092 Length=13256 Score = 152 bits (168), Expect = 9e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | |||||||| | || || || ||||||||||| |||||| Sbjct 11921 CCACCACGAAGGCGAAGGACCAAGTGCAAAGTCGATTCCTTTTGGATGTTGTAATCGCTC 11862 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | |||||||| | ||||| ||||| || || | | |||||| || || ||| Sbjct 11861 AAAGTGCGACCATCTTCGAGTTGCTTGCCGGCAAAGATCAAACGTTGTTGATCTGGAGGA 11802 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||||||||||||||| ||| |||||| || || | || | | ||| || Sbjct 11801 ATGCCTTCCTTGTCTTGAATTTTTTGCTTGACATTATCAATCGAATCCGAAGGTTCGACA 11742 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| |||||||| || ||||| | |||||| ||||| |||||||| Sbjct 11741 TCCAATGTGATGGTCTTACCCGTCAAGGTCTTTACGAAGATCTGCAT 11695 >seq580 Length=37562 Score = 152 bits (168), Expect = 9e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| ||||| |||||||||||||| || || || || ||||| ||||| || || Sbjct 7811 CCTCCACGAAGACGCAATACCAAGTGGAGAGTAGATTCCTTTTGAATGTTGTAGTCACTT 7870 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | ||| | || ||||| | || || || ||||| || | | |||||| || || || Sbjct 7871 AATGTACGACCGTCTTCAAGTTGTTTACCAGCGAAAATCAAACGTTGTTGATCCGGAGGG 7930 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||||||||||||||| |||||| |||||| || || | ||| | || ||| || Sbjct 7931 ATGCCTTCCTTGTCTTGGATCTTTTGCTTGACATTATCAATCGAGTCGGATGGTTCAACA 7990 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||| |||||||||||||| | || ||||| || || ||||| Sbjct 7991 TCCAAGGTAATGGTTTTTCCCGTCAAAGTTTTGACAAAGATTTGCAT 8037 Score = 131 bits (144), Expect = 3e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306 ||||| |||||||| | || || || |||||||| || || || || || | ||| Sbjct 8507 CGCAACACCAAGTGCAAGGTCGATTCCTTTTGGATATTGTAGTCACTAAGAGTACGTCCA 8566 Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366 ||||| || || || || || || || | | |||||| || || ||||| ||||||||| Sbjct 8567 TCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTG 8626 Query 68367 TCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATG 68426 |||||||| ||| ||||||| || || | ||| | | ||| || ||||| || || Sbjct 8627 TCTTGAATTTTTTGCTTGACGTTATCAATCGAGTCCGAAGGTTCCACGTCCAACGTAATT 8686 Query 68427 GTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || ||||| ||||| |||||||| || || ||||| Sbjct 8687 GTCTTTCCGGTGAGTGTCTTGACAAAGATTTGCAT 8721 Score = 116 bits (128), Expect = 7e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 ||||| || || ||||| || ||||| ||||| ||||| ||| || | |||||||| Sbjct 8285 ACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCACTGAGAGTGCGGCCATCTTCG 8344 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | || || || || || || | || ||| ||||| ||||| ||||||||||| ||||| Sbjct 8345 AGTTGTTTGCCAGCAAAAATCAATCGTTGCTGGTCTGGTGGGATGCCTTCCTTATCTTGG 8404 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 |||||| || ||| || || | ||| | | ||| || ||||| || || || || Sbjct 8405 ATCTTTTGTTTTACGTTATCAATCGAGTCCGAAGGTTCGACATCCAATGTAATTGTCTTG 8464 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || | ||||| ||||| || ||||| Sbjct 8465 CCGGTCAACGTCTTTACGAAAATTTGCAT 8493 Score = 95.1 bits (104), Expect = 2e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306 ||||| || | ||||| || || || || || ||||| || || ||| | | ||| Sbjct 8051 CGCAAGACTAGATGTAGAGTAGATTCCTTCTGAATGTTGTAGTCACTGAGAGAACGACCA 8110 Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366 ||||| | || || || || || || | | |||||| || || || |||||||| ||| Sbjct 8111 TCTTCGAGTTGTTTGCCAGCAAAAATTAAACGTTGTTGATCTGGAGGGATGCCTTCTTTG 8170 Query 68367 TCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATG 68426 |||||||||||| || || || || | ||||| | ||| || || | || || Sbjct 8171 TCTTGAATCTTTTGTTTCACATTATCAATTGAGTCTGAAGGTTCCACGTCAAGTGTAATA 8230 Query 68427 GTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || ||||| || | ||||||||||| || ||||| Sbjct 8231 GTCTTTCCAGTCAATGTCTTGACGAAAATTTGCAT 8265 >seq5008 Length=14815 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | ||||| || || || || |||||||||||||| |||||| Sbjct 6448 CCACCACGAAGACGAAGGACCAAATGAAGAGTAGATTCTTTTTGGATGTTGTAATCGCTC 6389 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | |||||||| | || || || || || || | | |||||| || || ||| Sbjct 6388 AAAGTACGTCCATCTTCAAGTTGTTTGCCTGCAAAGATCAAACGTTGTTGATCTGGAGGA 6329 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||||||||||||||||||| |||||| || || | || | | ||| || Sbjct 6328 ATGCCTTCCTTGTCTTGAATCTTTTGCTTGACATTATCAATCGAATCCGAAGGTTCGACA 6269 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| |||||||| || || || | ||||||||||| |||||||| Sbjct 6268 TCCAACGTGATGGTCTTGCCTGTCAATGTCTTGACGAAGATCTGCAT 6222 >seq2232 Length=15861 Score = 143 bits (158), Expect = 5e-29 Identities = 177/241 (73%), Gaps = 1/241 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | |||||||| | || || || ||||| ||||| |||||| Sbjct 622 CCACCACGAAGACGAAGGACCAAGTGCAAAGTCGATTCCTTTTGAATGTTGTAATCGCTC 563 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | |||||||| | ||||| ||||| || || | | |||||| || || ||| Sbjct 562 AAAGTACGACCATCTTCGAGTTGCTTGCCGGCAAAGATCAAACGTTGTTGATCTGGAGGA 503 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||||||||| || |||||| ||||||| || || | ||| | | ||||| Sbjct 502 ATACCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCAATCGAGTCCGAAGGCTCTACA 443 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATGCTATTATAC 68474 ||||| |||||||| || || || | ||||||||||| |||||||| |||| || ||| Sbjct 442 TCCAACGTGATGGTCTTGCCAGTCAATGTCTTGACGAAAATCTGCATATTGCT-TTCTAC 384 Query 68475 C 68475 | Sbjct 383 C 383 >seq419 Length=23932 Score = 143 bits (158), Expect = 5e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 ||||| || | ||||| || |||||||| || |||||| || || | |||||||| Sbjct 23038 ACCAAATGCAATGTGGATTCCTTTTGGATATTGTAATCGCTCAGGGTACGACCATCTTCG 22979 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||||| || || || || || | |||||| || || |||||||||||||| |||||| Sbjct 22978 AGTTGCTTGCCAGCAAAGATAAGACGTTGTTGATCTGGAGGAATGCCTTCCTTATCTTGA 22919 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 |||||| ||||||| || |||| ||| | || || || || | ||||| || || Sbjct 22918 ATCTTTTGCTTGACGTTGTCAATGGAGTCCGATGGCTCAACATCGAGCGTGATTGTCTTC 22859 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||| |||||||| || || ||||| Sbjct 22858 CCCGTGAGTGTCTTGACAAAGATTTGCAT 22830 Score = 138 bits (152), Expect = 2e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| || || || || ||||||||||| || || || || | |||||||| Sbjct 23722 ACCAAGTGAAGAGTCGATTCCTTTTGGATGTTGTAGTCACTAAGGGTGCGGCCATCTTCA 23663 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | || || || || || ||||| | |||||| || || ||||||||||||||||||||| Sbjct 23662 AGTTGTTTACCAGCAAAAATGAGGCGTTGTTGATCTGGAGGAATGCCTTCCTTGTCTTGA 23603 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 |||||| ||||||| || |||| || | || ||| || || | || ||||| || Sbjct 23602 ATCTTTTGCTTGACGTTGTCAATGGAATCCGATGGTTCGACATCGAGAGTAATGGTCTTA 23543 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| | ||||| ||||| || ||||| Sbjct 23542 CCCGTCAATGTCTTCACGAAGATTTGCAT 23514 Score = 138 bits (152), Expect = 2e-27 Identities = 145/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 68271 TCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAAT 68330 || ||||||||||| || ||| ||| || | |||||||| | ||||| ||||| || Sbjct 23932 TCCTTTTGGATGTTGTAGTCGCTGAGAGTGCGGCCATCTTCGAGTTGCTTGCCGGCAAAG 23873 Query 68331 ATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCC 68390 ||||| | |||||| || ||||||||||||||||||||||| |||||| |||||| Sbjct 23872 ATGAGACGTTGTTGATCAGGTGGAATGCCTTCCTTGTCTTGGATCTTTTGCTTGACATTG 23813 Query 68391 TCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACG 68450 || || | || | | ||| || || | ||| |||||||| ||||| | |||||||| Sbjct 23812 TCAATAGAATCCGAAGGTTCGACATCGAGGGTAATGGTTTTACCCGTCAATGTCTTGACA 23753 Query 68451 AATATCTGCAT 68461 || || ||||| Sbjct 23752 AAGATTTGCAT 23742 Score = 122 bits (134), Expect = 2e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| ||||| ||||| || | || || || ||||||||||| || ||| Sbjct 23512 CCACCACGAAGACGCAAGACCAAATGCAATGTAGATTCCTTTTGGATGTTGTAGTCGCTT 23453 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | |||||||| | || || ||||| || ||||| | |||||| || || ||| Sbjct 23452 AAAGTACGGCCATCTTCGAGTTGTTTACCGGCAAAAATGAGGCGTTGTTGATCTGGAGGA 23393 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||||||||||||||| |||||| || || || |||| ||| | | ||| || Sbjct 23392 ATGCCTTCCTTGTCTTGGATCTTTTGTTTAACATTATCAATGGAGTCCGAAGGTTCGACG 23333 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||| || || || || | ||||| || || || ||||| Sbjct 23332 TCAAGTGTGATCGTCTTACCGGTCAACGTCTTTACAAAAATTTGCAT 23286 Score = 107 bits (118), Expect = 4e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 ||||| || | || || || |||||||| || || ||| | || | || ||||| Sbjct 23266 ACCAAATGCAATGTAGATTCCTTTTGGATATTGTAGTCGCTCAAAGTTCGTCCGTCTTCG 23207 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||| || || || || || || | |||||| || || |||||||||||||| |||||| Sbjct 23206 AGCTGTTTACCAGCAAAGATAAGACGTTGTTGATCTGGAGGAATGCCTTCCTTATCTTGA 23147 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 |||||| || ||| ||||||| ||| | || ||| || || | ||||| || || Sbjct 23146 ATCTTTTGTTTCACGTTGTCGATGGAGTCCGATGGTTCGACGTCAAGTGTGATCGTCTTA 23087 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || | ||||| || || || ||||| Sbjct 23086 CCGGTCAAAGTCTTAACAAAGATTTGCAT 23058 >seq433 Length=60781 Score = 107 bits (118), Expect = 4e-18 Identities = 142/192 (74%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 268401 GAGGGCTCTCGTGGTTGAAGAGGATGCCGTTG-CACGCGAACATGCCATATGCCTCACGG 268459 |||| || || |||||||| || || || || ||| | ||||| ||||| || ||||| Sbjct 32924 GAGGACTTTCATGGTTGAAAAGAATACCATTTACAC-CAAACATACCATAAGCTTCACGA 32982 Query 268460 TAGTTCACGACCGTCCAGTATGCAAACATCTTTGCAACTGCGTACGGAGAACGTGGATGG 268519 || || || |||||||| ||||||| || || || |||| ||||| ||||||| Sbjct 32983 TAATTGACAACCGTCCAAAATGCAAATTGTTTAGCTACACCGTAAGGAGATCGTGGATAA 33042 Query 268520 AAGGGCGTCGTGATCT-TTTGAGGGATTTCTCGGACTTTGCCAAAGAGCTCGGAGGTCGA 268578 || || ||| | ||| |||| || | ||| |||| |||||||||||| || ||||| Sbjct 33043 AATGGAGTCTTT-TCTGTTTGTGGAGTCTCTTTTACTTGGCCAAAGAGCTCTGAAGTCGA 33101 Query 268579 TGCTTGGTAGAA 268590 |||||||| || Sbjct 33102 AGCTTGGTAAAA 33113 >seq1495 Length=520 Score = 89.7 bits (98), Expect = 9e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 ||||| || ||||||||||| | | || || | || | |||||||||||||||||| Sbjct 245 CGCCATTGAATGTACTGGTTCGCTGAGATATCTAAATGTTGTTCAATATGGTGGAAAGCA 186 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTCGGT 225100 ||||| || || || || | |||||| || || ||||| | | || ||| ||| Sbjct 185 TGCTGAGCCACATATGCAAAGCGCATCGCAGGGTGTTTCCATAGTGTACCAGTAGTTGGT 126 Query 225101 TGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAATC 225160 | | ||| || || | | ||||| | ||||| || || |||||||| || || || Sbjct 125 TCAGTCTCACCAGTCAACATTTTGATCATCGTAGATTTACCAGCACCATTAGGACCGATG 66 Query 225161 ACGCCAATCCGGGATGACATTGCA 225184 || |||| || || || | |||| Sbjct 65 ACAGCAATACGAGACGATAATGCA 42 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921560962346760