Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq419 178 1e-39 seq580 163 2e-35 seq5008 154 1e-32 seq2232 132 4e-26 seq2092 129 5e-25 seq4831 96.9 3e-15 >seq419 Length=23932 Score = 178 bits (196), Expect = 1e-39 Identities = 178/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | ||| || ||||| | |||||||| ||||| |||||||| ||| Sbjct 23515 ATACCACCACGAAGACGCAAGACCAAATGCAATGTAGATTCCTTTTGGATGTTGTAGTCG 23456 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || | |||||| |||||| ||||||||||| || | ||||| || ||||| || ||| Sbjct 23455 CTTAAAGTACGGCCATCTTCGAGTTGTTTACCGGCAAAAATGAGGCGTTGTTGATCTGGA 23396 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| ||||| ||||||||||| | | |||| || ||| | | |||| Sbjct 23395 GGAATGCCTTCCTTGTCTTGGATCTTTTGTTTAACATTATCAATGGAGTCCGAAGGTTCG 23336 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 ||||| | || | ||| || ||||||| || ||||||||||| |||||| Sbjct 23335 ACGTCAAGTGTGATCGTCTTACCGGTCAACGTCTTTACAAAAATTTGCATG 23285 Score = 149 bits (164), Expect = 5e-31 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233 || ||||| | |||||||| ||||| || ||||| ||||||| ||| || ||||| Sbjct 23266 ACCAAATGCAATGTAGATTCCTTTTGGATATTGTAGTCGCTCAAAGTTCGTCCGTCTTCG 23207 Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293 || ||||||||||| |||| ||||| ||||| || |||||||||||||| || || | Sbjct 23206 AGCTGTTTACCAGCAAAGATAAGACGTTGTTGATCTGGAGGAATGCCTTCCTTATCTTGA 23147 Query 114294 ATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTG 114353 ||||||||||| | | || | || ||| | | ||||||||| | || | ||| || Sbjct 23146 ATCTTTTGTTTCACGTTGTCGATGGAGTCCGATGGTTCGACGTCAAGTGTGATCGTCTTA 23087 Query 114354 CCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 ||||||| ||| || ||||| || |||||| Sbjct 23086 CCGGTCAAAGTCTTAACAAAGATTTGCATG 23057 Score = 131 bits (144), Expect = 1e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| ||||| | || ||||| ||||| || ||||||||||||| |||||| |||||| Sbjct 23039 AACCAAATGCAATGTGGATTCCTTTTGGATATTGTAATCGCTCAGGGTACGACCATCTTC 22980 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 ||||| || ||||| |||| ||||| ||||| || |||||||||||||| || || Sbjct 22979 GAGTTGCTTGCCAGCAAAGATAAGACGTTGTTGATCTGGAGGAATGCCTTCCTTATCTTG 22920 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 ||||||||| || | | |||| || ||| | | || || || | || | || || Sbjct 22919 AATCTTTTGCTTGACGTTGTCAATGGAGTCCGATGGCTCAACATCGAGCGTGATTGTCTT 22860 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCATGGCTT 114387 || || || || || ||||| || ||||||| || Sbjct 22859 CCCCGTGAGTGTCTTGACAAAGATTTGCATGGTTT 22825 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| ||||| |||||||| || || | || || ||||||||||||||||||| Sbjct 23710 GTCGATTCCTTTTGGATGTTGTAGTCACTAAGGGTGCGGCCATCTTCAAGTTGTTTACCA 23651 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || | ||||| || ||||| || |||||||||||||| ||||| ||||||||| || Sbjct 23650 GCAAAAATGAGGCGTTGTTGATCTGGAGGAATGCCTTCCTTGTCTTGAATCTTTTGCTTG 23591 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| || || | | |||||| || | || | || || || |||| || Sbjct 23590 ACGTTGTCAATGGAATCCGATGGTTCGACATCGAGAGTAATGGTCTTACCCGTCAATGTC 23531 Query 114366 TTTACAAAAATCTGCAT 114382 || || || || ||||| Sbjct 23530 TTCACGAAGATTTGCAT 23514 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 114192 TCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAG 114251 || ||||| |||||||| ||||| | ||| || |||||| ||||| || || || || Sbjct 23932 TCCTTTTGGATGTTGTAGTCGCTGAGAGTGCGGCCATCTTCGAGTTGCTTGCCGGCAAAG 23873 Query 114252 ATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT 114311 |||||||| ||||| || || ||||||||||| ||||| |||||||| || | | Sbjct 23872 ATGAGACGTTGTTGATCAGGTGGAATGCCTTCCTTGTCTTGGATCTTTTGCTTGACATTG 23813 Query 114312 TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 114371 |||| | || | | |||||| || | ||| | ||||| || |||| || || ||| Sbjct 23812 TCAATAGAATCCGAAGGTTCGACATCGAGGGTAATGGTTTTACCCGTCAATGTCTTGACA 23753 Query 114372 AAAATCTGCATG 114383 || || |||||| Sbjct 23752 AAGATTTGCATG 23741 >seq580 Length=37562 Score = 163 bits (180), Expect = 2e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | ||| || || || | |||||||| |||||||||||||| || Sbjct 7808 ATGCCTCCACGAAGACGCAATACCAAGTGGAGAGTAGATTCCTTTTGAATGTTGTAGTCA 7867 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || | |||||| ||||||||||||||||||||| | || | ||| ||||| |||||| Sbjct 7868 CTTAATGTACGACCGTCTTCAAGTTGTTTACCAGCGAAAATCAAACGTTGTTGATCCGGA 7927 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || |||||||| ||||| |||||||| || | | |||| | ||||| | ||| Sbjct 7928 GGGATGCCTTCCTTGTCTTGGATCTTTTGCTTGACATTATCAATCGAGTCGGATGGTTCA 7987 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | ||||| || |||| |||||| ||||| || ||||| Sbjct 7988 ACATCCAAGGTAATGGTTTTTCCCGTCAAAGTTTTGACAAAGATTTGCAT 8037 Score = 149 bits (164), Expect = 5e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||||| | ||| |||| ||||| |||||||| || ||||||||||| || Sbjct 8036 ATACCACCACGTAAACGCAAGACTAGATGTAGAGTAGATTCCTTCTGAATGTTGTAGTCA 8095 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || | || |||| |||||| |||||||| ||||| | || | ||| ||||| || ||| Sbjct 8096 CTGAGAGAACGACCATCTTCGAGTTGTTTGCCAGCAAAAATTAAACGTTGTTGATCTGGA 8155 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || |||||||||||||| |||||||||||| | | |||| | ||| | | ||| Sbjct 8156 GGGATGCCTTCTTTGTCTTGAATCTTTTGTTTCACATTATCAATTGAGTCTGAAGGTTCC 8215 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||||| | || | || || || |||| || || || ||||| ||||| Sbjct 8216 ACGTCAAGTGTAATAGTCTTTCCAGTCAATGTCTTGACGAAAATTTGCAT 8265 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| | | | || ||||| | || ||||| ||||||||||||||||| Sbjct 8264 ATACCACCACGCAAACGTAGGACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCA 8323 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || | ||| || |||||| |||||||| ||||| | || | || || ||||| || Sbjct 8324 CTGAGAGTGCGGCCATCTTCGAGTTGTTTGCCAGCAAAAATCAATCGTTGCTGGTCTGGT 8383 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || |||||||| || || ||||||||||||| | |||| | ||| | | |||| Sbjct 8384 GGGATGCCTTCCTTATCTTGGATCTTTTGTTTTACGTTATCAATCGAGTCCGAAGGTTCG 8443 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || |||||||||| || ||||| ||||| ||||| Sbjct 8444 ACATCCAATGTAATTGTCTTGCCGGTCAACGTCTTTACGAAAATTTGCAT 8493 >seq5008 Length=14815 Score = 154 bits (170), Expect = 1e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| || | | || ||||| | |||||||||||||| |||||||||||||| Sbjct 6449 ACCACCACGAAGACGAAGGACCAAATGAAGAGTAGATTCTTTTTGGATGTTGTAATCGCT 6390 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| ||||||||||||||| || || |||| | ||| ||||| || ||||| Sbjct 6389 CAAAGTACGTCCATCTTCAAGTTGTTTGCCTGCAAAGATCAAACGTTGTTGATCTGGAGG 6330 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||||||||| ||||| ||||||||| || | | |||| | || | | |||||| Sbjct 6329 AATGCCTTCCTTGTCTTGAATCTTTTGCTTGACATTATCAATCGAATCCGAAGGTTCGAC 6270 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||| || | || ||||| |||| || || || || |||||||| Sbjct 6269 ATCCAACGTGATGGTCTTGCCTGTCAATGTCTTGACGAAGATCTGCAT 6222 >seq2232 Length=15861 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| || | | || || || | || ||||| |||||||||||||||||||| Sbjct 623 ACCACCACGAAGACGAAGGACCAAGTGCAAAGTCGATTCCTTTTGAATGTTGTAATCGCT 564 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || ||||||| |||||| ||||| || || || |||| | ||| ||||| || ||||| Sbjct 563 CAAAGTACGACCATCTTCGAGTTGCTTGCCGGCAAAGATCAAACGTTGTTGATCTGGAGG 504 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| ||||| |||||||| || | | |||| | ||| | | || || Sbjct 503 AATACCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCAATCGAGTCCGAAGGCTCTAC 444 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||| || | || ||||| |||| || || || ||||||||||| Sbjct 443 ATCCAACGTGATGGTCTTGCCAGTCAATGTCTTGACGAAAATCTGCAT 396 >seq2092 Length=13256 Score = 129 bits (142), Expect = 5e-25 Identities = 177/246 (72%), Gaps = 1/246 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| || | | || || || | || ||||| ||||| |||||||||||||| Sbjct 11922 ACCACCACGAAGGCGAAGGACCAAGTGCAAAGTCGATTCCTTTTGGATGTTGTAATCGCT 11863 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || ||| ||| |||||| ||||| || || || |||| | ||| ||||| || ||||| Sbjct 11862 CAAAGTGCGACCATCTTCGAGTTGCTTGCCGGCAAAGATCAAACGTTGTTGATCTGGAGG 11803 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||||||||| ||||| ||| ||||| || | | |||| | || | | |||||| Sbjct 11802 AATGCCTTCCTTGTCTTGAATTTTTTGCTTGACATTATCAATCGAATCCGAAGGTTCGAC 11743 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCTTAAT-TAT 114393 |||| || | || || || |||| || ||||| || |||||||| | | || ||| Sbjct 11742 ATCCAATGTGATGGTCTTACCCGTCAAGGTCTTTACGAAGATCTGCATCGTTCGATCTAT 11683 Query 114394 TCCTTT 114399 || ||| Sbjct 11682 TCATTT 11677 >seq4831 Length=17254 Score = 96.9 bits (106), Expect = 3e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 114159 CCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATA 114218 |||||||| | | ||| | |||| ||| |||||| ||||||| || ||||| | || Sbjct 11377 CCACGTAGCCGAAGAACAAGGTGTAGCGTTGATTCTCTTTGAATATTATAATCCCGCAAT 11436 Query 114219 GTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATG 114278 || || |||||| |||||||| ||||| | ||||| ||| ||| || ||||||||| Sbjct 11437 GTTCGTCCATCTTCTAGTTGTTTGCCAGCAAATATGAGTCGCATTTGATCAGGAGGAATG 11496 Query 114279 CCTTCTTTGTC 114289 |||||||| || Sbjct 11497 CCTTCTTTTTC 11507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420107092970796