Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq419 123 6e-23 seq5008 122 2e-22 seq580 109 1e-18 seq2232 100 7e-16 >seq419 Length=23932 Score = 123 bits (136), Expect = 6e-23 Identities = 145/195 (74%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| ||||||||||| |||||| | || ||||||||||| | ||||| || || || Sbjct 23249 TTCCTTTTGGATATTGTAGTCGCTCAAAGTTCGTCCGTCTTCGAGCTGTTTACCAGCAAA 23190 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||| ||||| |||||| ||||| || ||||| ||||| || || || |||||| Sbjct 23189 GATAAGACGTTGTTGA---TCTGGAGGAATGCCTTCCTTATCTTGAATCTTTTGTTTCAC 23133 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 ||| || || || || | ||| || || || ||||||||||| ||||||| |||||| Sbjct 23132 GTTGTCGATGGAGTCCGATGGTTCGACGTCAAGTGTGATCGTCTTACCGGTCAAAGTCTT 23073 Query 288459 GACGAATATCTGCAT 288473 || || || ||||| Sbjct 23072 AACAAAGATTTGCAT 23058 Score = 116 bits (128), Expect = 9e-21 Identities = 173/239 (72%), Gaps = 15/239 (6%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || | | ||| || | ||| | ||| ||| ||||||||||| || | Sbjct 23060 CATG-CCACCACGCAAACGAAGAACCAAATGCAATGTGGATTCCTTTTGGATATTGTAAT 23002 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 || || || || || ||||| | ||| || || || ||||| ||||| |||||| | Sbjct 23001 CGCTCAGGGTACGACCATCTTCGAGTTGCTTGCCAGCAAAGATAAGACGTTGTTGA---T 22945 Query 288362 CTGGG---ATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTTTTCTATAGAATCGCTC 288417 |||| || ||||| ||||| || || ||| |||| ||||| || || || || | Sbjct 22944 CTGGAGGAATGCCTTCCTTATCTTGAATCTTTTGCTTG-ACGTTGTCAATGGAGTC---C 22889 Query 288418 GAT---TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| || || ||||||||||| |||||||| || || |||||||| || || ||||| Sbjct 22888 GATGGCTCAACATCGAGCGTGATTGTCTTCCCCGTGAGTGTCTTGACAAAGATTTGCAT 22830 Score = 91.5 bits (100), Expect = 3e-13 Identities = 138/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| |||||||| || |||||| | || || || ||||| | |||||| || || || Sbjct 23477 TTCCTTTTGGATGTTGTAGTCGCTTAAAGTACGGCCATCTTCGAGTTGTTTACCGGCAAA 23418 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 || || || |||||| ||||| || ||||| || || ||||| || ||| || Sbjct 23417 AATGAGGCGTTGTTGA---TCTGGAGGAATGCCTTCCTTGTCTTGGATCTTTTGTTTAAC 23361 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 || || || || || | ||| || || || ||||||||||| ||||||| ||||| Sbjct 23360 ATTATCAATGGAGTCCGAAGGTTCGACGTCAAGTGTGATCGTCTTACCGGTCAACGTCTT 23301 Query 288459 GACGAATATCTGCAT 288473 || || || ||||| Sbjct 23300 TACAAAAATTTGCAT 23286 >seq5008 Length=14815 Score = 122 bits (134), Expect = 2e-22 Identities = 168/231 (73%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || | ||||| || |||||||||||| || || ||| Sbjct 6448 CCACCACGAAGACGAAGGACCAAATGAAGAGTAGATTCTTTTTGGATGTTGTAATCGCTC 6389 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || ||||| ||||| | |||||| ||||| ||||||| ||| |||||| ||||| Sbjct 6388 AAAGTACGTCCATCTTCAAGTTGTTTGCCTGCAAAGATCAAACGTTGTTGA---TCTGGA 6332 Query 288367 ---ATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 || ||||| || || || || ||| |||| || || || || ||||| | ||| Sbjct 6331 GGAATGCCTTCCTTGTCTTGAATCTTTTGCTTG-ACATTATCAATCGAATCCGAAGGTTC 6273 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || | |||||| ||||| || |||| ||||||||||| |||||||| Sbjct 6272 GACATCCAACGTGATGGTCTTGCCTGTCAATGTCTTGACGAAGATCTGCAT 6222 >seq580 Length=37562 Score = 109 bits (120), Expect = 1e-18 Identities = 142/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| ||||||||||| ||||| || || ||||| ||||| |||||||| || || || Sbjct 8530 TTCCTTTTGGATATTGTAGTCACTAAGAGTACGTCCATCTTCCAATTGTTTGCCAGCAAA 8589 Query 288342 GATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||||| ||| ||||| |||| || || ||||| || || || ||||| || || Sbjct 8590 GATCAAACGTTGTTG---ATCTGGAGGAATACCTTCCTTGTCTTGAATTTTTTGCTTGAC 8646 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 ||| || || || || | ||| || || | ||| || ||||| ||||| || ||||| Sbjct 8647 GTTATCAATCGAGTCCGAAGGTTCCACGTCCAACGTAATTGTCTTTCCGGTGAGTGTCTT 8706 Query 288459 GACGAATATCTGCAT 288473 ||| || || ||||| Sbjct 8707 GACAAAGATTTGCAT 8721 Score = 87.8 bits (96), Expect = 4e-12 Identities = 137/195 (70%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || || || || ||||| ||| | || || ||||| | |||||| || || || Sbjct 8074 TTCCTTCTGAATGTTGTAGTCACTGAGAGAACGACCATCTTCGAGTTGTTTGCCAGCAAA 8133 Query 288342 GATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 || | ||| |||||| ||||| ||| |||||||| || || || || |||||| Sbjct 8134 AATTAAACGTTGTTGA---TCTGGAGGGATGCCTTCTTTGTCTTGAATCTTTTGTTTCAC 8190 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 || || || || || | ||| || || || || || ||||| || |||| ||||| Sbjct 8191 ATTATCAATTGAGTCTGAAGGTTCCACGTCAAGTGTAATAGTCTTTCCAGTCAATGTCTT 8250 Query 288459 GACGAATATCTGCAT 288473 |||||| || ||||| Sbjct 8251 GACGAAAATTTGCAT 8265 >seq2232 Length=15861 Score = 100 bits (110), Expect = 7e-16 Identities = 142/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| ||||| || || || ||| | || || || ||||| | ||| || || || || Sbjct 587 TTCCTTTTGAATGTTGTAATCGCTCAAAGTACGACCATCTTCGAGTTGCTTGCCGGCAAA 528 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGAT-TTTCGCTTTCA 288397 ||||| ||| |||||| ||||| || ||||| || |||||||| ||| |||| | Sbjct 527 GATCAAACGTTGTTGA---TCTGGAGGAATACCTTCCTTGTCCTGGATCTTTTGCTTG-A 472 Query 288398 CGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCT 288457 |||| || || || || | ||||| || | |||||| ||||| || |||| |||| Sbjct 471 CGTTGTCAATCGAGTCCGAAGGCTCTACATCCAACGTGATGGTCTTGCCAGTCAATGTCT 412 Query 288458 TGACGAATATCTGCAT 288473 ||||||| |||||||| Sbjct 411 TGACGAAAATCTGCAT 396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179573795320774